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Contents
List of Examples
List of Figures
List of Tables
Title and Copyright Information
Preface
Audience
Documentation Accessibility
Related Documents
Conventions
Syntax Descriptions
What's New in Oracle Multimedia DICOM?
New Features for Release 11.2
Part I DICOM Common Usage and Reference
1
Introduction to Oracle Multimedia DICOM
1.1
Medical Imaging and Communication
1.1.1
History of the DICOM Standard
1.1.2
Overview of DICOM Content
1.2
Oracle Multimedia and DICOM
1.2.1
Oracle Multimedia DICOM Format Support
1.2.2
ORDDicom Object Type
1.2.3
DICOM Metadata Extraction
1.2.4
DICOM Conformance Validation
1.2.5
DICOM Image Processing
1.2.6
Making Confidential Data in DICOM Content Anonymous
1.2.7
Creating ORDDicom Objects from Images or Video and Metadata
1.2.8
Run-Time, Updatable DICOM Data Model
2
Oracle Multimedia DICOM Concepts
2.1
Oracle Multimedia DICOM Architecture
2.2
Oracle Multimedia DICOM Storage
2.3
Model-Driven Design
2.4
DICOM Data Model Repository
2.4.1
Configuration Documents in the Repository
2.4.2
Administrator and User Sessions in the Repository
2.5
Extraction of Metadata from DICOM Content
2.5.1
Overview of the Metadata Extraction and XML Mapping Process
2.5.2
Sample XML Documents Used in the Extraction and Mapping Process
2.6
Validation of DICOM Content
2.7
Image Conversion and Creation of New DICOM Content
2.8
Making DICOM Content Anonymous
2.9
Extraction of DICOM Metadata for Partitioning
3
Overview of DICOM Development
3.1
The DICOM Development Environment
3.1.1
APIs for Use With Oracle Multimedia DICOM
3.1.2
Views in the DICOM Repository
3.2
DICOM Developer and Administrator Tasks
3.2.1
Task 1: Load the Repository
3.2.2
Task 2: Load the DICOM Content
3.2.3
Task 3: Extract the DICOM Metadata
3.2.3.1
Extracting Metadata: Administrator Tasks
3.2.3.2
Extracting Metadata: Developer Tasks
3.2.4
Task 4: Search and Retrieve DICOM Attributes
3.2.5
Task 5: Write and Edit DICOM Metadata
3.2.6
Task 6: Process, Convert, and Compress DICOM Data
3.2.7
Task 7: Create DICOM Content from Secondary Capture Images and Video
3.2.8
Task 8: Validate Conformance with DICOM Constraints
3.2.8.1
Validating Conformance: Administrator Tasks
3.2.8.2
Validating Conformance: Developer Tasks
3.2.9
Task 9: Protect Confidential Patient Data
3.2.9.1
Protecting Privacy: Administrator Tasks
3.2.9.2
Protecting Privacy: Developer Tasks
3.2.10
Task 10: Improve Storage When Extracting DICOM Attributes
4
DICOM Data Model Utility Reference
4.1
Directory Definition and Setup for ORD_DICOM Examples
DICOM Data Model Utility Functions
getDictionaryTag( ) Function
getMappingXPath( ) Function
DICOM Data Model Utility Procedures
setDataModel( ) Procedure
DICOM Repository Public Views
orddcm_conformance_vld_msgs
orddcm_constraint_names
orddcm_documents
orddcm_document_types
Part II DICOM Development Usage and Reference
5
DICOM Application Development
5.1
Setting Up Your Environment
5.2
Creating a Table with an ORDDicom Column
5.3
Loading DICOM Content Using the SQL*Loader Utility
5.4
Developing DICOM Applications Using the PL/SQL API
5.4.1
Selecting DICOM Attributes
5.4.2
Creating Thumbnail Images and Changing Image Formats
5.4.3
Making Anonymous Copies of ORDDicom Objects
5.4.4
Checking the Conformance of ORDDicom Objects
5.4.5
Handling Oracle Multimedia DICOM Exceptions in PL/SQL
5.5
Developing DICOM Applications Using the DICOM Java API
5.5.1
Setting Up Your Environment Variables
5.5.2
Importing Oracle Java Classes into Your Application
5.5.3
Handling Oracle Multimedia DICOM Exceptions in Java
6
DICOM Sample Application
6.1
Overview of the DICOM Sample Application
6.2
Description of the DICOM Sample Application
6.2.1
Logging In to the DICOM Image Archive Interface
6.2.2
Searching for Specific DICOM Images
6.2.2.1
Attribute Searches
6.2.2.2
Keyword Searches
6.2.2.3
Semantic Searches
6.2.3
Importing DICOM Images as a Clinician
6.2.4
Processing DICOM Images as a Researcher
6.2.5
Logging In to the DICOM Image Archive Administration Interface
6.2.6
Inserting Configuration Documents
7
ORDDicom Object Type Reference
7.1
ORDDicom Object Examples
7.1.1
Directory Definition and Setup for ORDDicom Object Examples
7.1.2
MEDICAL_IMAGE_OBJ Table Definition
ORDDicom Object Type
ORDDicom Constructors
ORDDicom( ) for BLOBs
ORDDicom( ) for ORDImage
ORDDicom( ) for Other Sources
ORDDicom Methods
export( )
extractMetadata( )
getAttributeByName( )
getAttributeByTag( )
getContent( )
getContentLength( )
getSeriesInstanceUID( )
getSOPClassUID( )
getSOPInstanceUID( )
getSourceInformation( )
getSourceLocation( )
getSourceName( )
getSourceType( )
getStudyInstanceUID( )
import( )
isAnonymous( )
isConformanceValid( )
isLocal( )
makeAnonymous( )
processCopy( ) to BLOBs
processCopy( ) to ORDDicom
processCopy( ) to ORDImage
setProperties( )
writeMetadata( )
8
DICOM Relational Interface Reference
8.1
Examples for DICOM Relational Functions and Procedures
8.1.1
Directory Definition and Setup for DICOM Relational Examples
8.1.2
MEDICAL_IMAGE_REL Table Definition
DICOM Relational Functions
extractMetadata( ) for BFILEs
extractMetadata( ) for BLOBs
extractMetadata( ) for ORDImage
isAnonymous( ) for BFILEs
isAnonymous( ) for BLOBs
isAnonymous( ) for ORDImage
isConformanceValid( ) for BFILEs
isConformanceValid( ) for BLOBs
isConformanceValid( ) for ORDImage
DICOM Relational Procedures
createDicomImage( ) for BFILEs
createDicomImage( ) for BLOBs
createDicomImage( ) for ORDImage
export( )
importFrom( )
makeAnonymous( ) for BFILEs
makeAnonymous( ) for BLOBs
makeAnonymous( ) for ORDImage
processCopy( ) for BFILEs
processCopy( ) for BFILEs with SOP Instance UID
processCopy( ) for BLOBs
processCopy( ) for BLOBs with SOP Instance UID
processCopy( ) for ORDImage
processCopy( ) for ORDImage with SOP Instance UID
writeMetadata( ) for BFILEs
writeMetadata( ) for BLOBs
writeMetadata( ) for ORDImage
Part III DICOM Administration Usage and Reference
9
Overview of DICOM Administration
9.1
Assigning Administrator Roles and Privileges
9.2
Managing XML Schemas
9.2.1
Registering XML Schemas
9.2.2
Finding User-Defined XML Schemas
9.3
Loading the Data Model Repository
9.4
Browsing the Repository with Views
9.5
Exporting Documents from the Repository
9.6
Inserting Documents into the Repository
9.6.1
Inserting Anonymity, Mapping, and Constraint Documents
9.6.2
Inserting Dictionary Documents
9.6.3
Inserting Preference and UID Definition Documents
9.6.4
Inserting Stored Tag List Documents
9.7
Updating Documents in the Repository
9.7.1
Updating Anonymity, Mapping, and Constraint Documents
9.7.2
Updating Dictionary Documents
9.7.3
Updating Preference and UID Definition Documents
9.8
Deleting Documents from the Repository
9.8.1
Deleting Anonymity, Mapping, and Constraint Documents
9.8.2
Deleting Dictionary Documents
9.8.3
Deleting Preference and UID Definition Documents
9.9
Oracle Data Pump Utilities Support for the Data Model Repository
9.9.1
Roles for Export and Import Operations
9.9.2
Modes for Export and Import Operations
9.9.2.1
Exporting in Schema Mode
9.9.2.2
Exporting in Full Mode
9.9.2.3
Importing in Schema Mode
9.9.2.4
Importing in Full Mode
10
Creating DICOM Configuration Documents
10.1
Characteristics of Configuration Documents
10.1.1
Characteristics of Anonymity Documents
10.1.2
Characteristics of Constraint Documents
10.1.3
Characteristics of Mapping Documents
10.1.4
Characteristics of Standard Dictionary Documents
10.1.5
Characteristics of Private Dictionary Documents
10.1.6
Characteristics of Preference Documents
10.1.7
Characteristics of UID Definition Documents
10.1.8
Characteristics of Stored Tag List Documents
10.2
Writing Configuration Documents
10.2.1
Creating Anonymity Documents
10.2.1.1
Making Standard Attributes Anonymous
10.2.1.2
Making Undefined Standard Attributes Anonymous
10.2.1.3
Making Selected Private Attributes Anonymous
10.2.1.4
Making All Private Attributes Anonymous
10.2.1.5
Using DICOM Value Locators in Anonymity Documents
10.2.2
Creating Constraint Documents
10.2.2.1
Defining a Simple Constraint Rule
10.2.2.2
Defining Constraint Rules by Importing Other Constraint Rules
10.2.2.3
Defining and Referencing Constraint Macros
10.2.2.4
Defining Recursive Constraint Macros
10.2.2.5
Using DICOM Value Locators in Constraint Documents
10.2.3
Creating Mapping Documents and Metadata XML Schemas
10.2.3.1
Structure of a Mapping Document
10.2.3.2
Structure of a Metadata XML Schema
10.2.3.3
Creating a Mapping Document for Metadata with No Schema Constraints
10.2.3.4
Creating a Mapping Document for Metadata with Schema Constraints and a Mapped Section Only
10.2.3.5
Creating a Mapping Document for Metadata with Schema Constraints
10.2.3.6
Using DICOM Value Locators in Mapping Documents
10.2.4
Creating Standard Dictionary Documents
10.2.4.1
Defining Standard Attributes
10.2.4.2
Retiring Standard Attributes
10.2.5
Creating Private Dictionary Documents
10.2.5.1
Defining Private Attributes
10.2.5.2
Defining Attribute Definers
10.2.5.3
Retiring Private Attributes
10.2.6
Creating Preference Documents
10.2.6.1
Defining the BINARY_SKIP_INVALID_ATTR Preference Parameter
10.2.6.2
Defining the EXP_IF_NULL_ATTR_IN_CONSTRAINT Preference Parameter
10.2.6.3
Defining the MANDATE_ATTR_TAGS_IN_STL Preference Parameter
10.2.6.4
Defining the MAX_RECURSION_DEPTH Preference Parameter
10.2.6.5
Defining the SPECIFIC_CHARACTER_SET Preference Parameter
10.2.6.6
Defining the SQ_WRITE_LEN Preference Parameter
10.2.6.7
Defining the VALIDATE_METADATA Preference Parameter
10.2.6.8
Defining the XML_SKIP_ATTR Preference Parameter
10.2.7
Creating UID Definition Documents
10.2.7.1
Defining UID Definitions
10.2.7.2
Retiring UID Definitions
10.2.8
Creating Stored Tag List Documents
11
Administering the DICOM Repository
11.1
Sample Session 1: Inserting Two Documents
11.2
Sample Session 2: Updating a Mapping Document
11.3
Sample Session 3: Deleting a Constraint Document
11.4
Sample Session 4: Inserting a Stored Tag List Document
11.4.1
Inserting a Stored Tag List Document with a Known Set of Tags
11.4.2
Generating and Inserting a Stored Tag List Document
12
ORD_DICOM_ADMIN Package Reference
12.1
Directory Definition and Setup for ORD_DICOM_ADMIN Examples
12.2
Important Notes for DICOM Repository Administrators
DICOM Data Model Repository Administrator Functions
generateTagListDocument( ) Function
getDocumentContent( ) Function
DICOM Data Model Repository Administrator Procedures
deleteDocument( ) Procedure
editDataModel( ) Procedure
exportDocument( ) Procedure
insertDocument( ) Procedure
publishDataModel( ) Procedure
rollbackDataModel( ) Procedure
DICOM Repository Administrator Views
orddcm_document_refs
General Format for DICOM Value Locators
Part IV DICOM Appendixes
A
DICOM Configuration Documents
B
DICOM XML Schemas
B.1
Anonymity Document Schema
B.2
Constraint Document Schema
B.3
Data Type Definition Schema
B.4
Default DICOM Metadata Schema
B.5
Manifest Document Schema
B.6
Mapping Document Schema
B.7
Metadata Data Type Definition Schema
B.8
Preference Document Schema
B.9
Private Dictionary Document Schema
B.10
Standard Dictionary Document Schema
B.11
Stored Tag List Document Schema
B.12
UID Definition Document Schema
C
DICOM Encoding Rules
C.1
Transfer Syntax for Medical Imaging
C.2
Definitions for Transfer Syntax Abbreviations
D
DICOM Processing and Supported Formats
D.1
DICOM Image Content and Compression Formats
D.1.1
DEFLATE Compression Format
D.1.2
MPEG Compression Format
D.1.3
RLE Compression Format
D.2
The frame Image Processing Operator
D.3
Other Image Processing Operators
D.4
Multiframe Image Processing and Creation
D.5
Multiframe DICOM Content Processing to AVI Format
D.6
Order of Precedence with processCopy( ) Method Arguments
E
DICOM Sample Applications
E.1
Oracle Multimedia DICOM Tutorial
E.2
Oracle Multimedia DICOM Image Archive Demonstration
F
Migrating from Release 10.2 DICOM Support
F.1
Using the DICOM Relational Interface to Migrate Applications
F.2
Copying Data and Rewriting Applications for DICOM
F.3
Choosing a Migration Option
Glossary
Index
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