Clinical Genomic APIs for Oracle Healthcare Foundation

Retrieve Pathways for a Gene Identifier

get

/ohfapi/cg/v3.3/genes/{id}/pathways

This endpoint supports the retrieval of Pathways for a Gene Row ID passed. It returns Pathway information like Pathway Name, Source, Version and other Pathway related information.

Request

Supported Media Types

application/json
application/xml

Path Parameters

id: integer(int64)

Minimum Value: 0

gene row ID

Query Parameters

limit(optional): integer(int32)

Number of rows to return
offset(optional): integer(int32)

Row number to start from

Security

basicAuth: basic

Type: basic

Response

Supported Media Types

application/json
application/xml

200 Response

successful operation

Root Schema : PageableCollection

Type: object

Model for paginated collections of data.

Show Source

count(optional): integer(int64)

Number of objects in the 'items' collection.
hasMore(optional): boolean

A boolean indicating if more pages are available.
items(optional): array items

A collection of paged items.
links(optional): array links

A collection of links containing hrefs to the current, next, and previous pages as applicable.
resourceType(optional): string

Identify the resource type

{
    "type":"object",
    "properties":{
        "resourceType":{
            "type":"string",
            "description":"Identify the resource type"
        },
        "items":{
            "type":"array",
            "xml":{
                "wrapped":true
            },
            "description":"A collection of paged items.",
            "items":{
                "$ref":"#/definitions/Serializable"
            }
        },
        "count":{
            "type":"integer",
            "format":"int64",
            "description":"Number of objects in the 'items' collection."
        },
        "hasMore":{
            "type":"boolean",
            "description":"A boolean indicating if more pages are available."
        },
        "links":{
            "type":"array",
            "example":"{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}",
            "xml":{
                "wrapped":true
            },
            "description":"A collection of links containing hrefs to the current, next, and previous pages as applicable.",
            "items":{
                "type":"string"
            }
        }
    },
    "description":"Model for paginated collections of data."
}

Nested Schema : items

Type: array

A collection of paged items.

Show Source

Array of: object Serializable

{
    "type":"array",
    "xml":{
        "wrapped":true
    },
    "description":"A collection of paged items.",
    "items":{
        "$ref":"#/definitions/Serializable"
    }
}

Nested Schema : links

Type: array

A collection of links containing hrefs to the current, next, and previous pages as applicable.

Show Source

Array of: string

{
    "type":"array",
    "example":"{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}",
    "xml":{
        "wrapped":true
    },
    "description":"A collection of links containing hrefs to the current, next, and previous pages as applicable.",
    "items":{
        "type":"string"
    }
}

Example:

{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}

Nested Schema : Serializable

Type: object

400 Response

Invalid parameters supplied

404 Response

Pathway(s) not found

Examples

The following example submits a GET request.

API URL

http://localhost:7010/ohfapi/cg/v3.3/genes/50259/pathways

Example of Response Body

The following example shows the contents of the response body in JSON format:

{
  "resourceType": "Pathways",
  "items": [
    {
      "identifier": {
        "system": "ODB",
        "value": "12"
      },
      "pathwayName": "Developmental Biology",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "21"
      },
      "pathwayName": "Axon guidance",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "28"
      },
      "pathwayName": "Signal transduction by L1",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "45"
      },
      "pathwayName": "L1CAM interactions",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "306"
      },
      "pathwayName": "EGFR downregulation",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "307"
      },
      "pathwayName": "Signaling by FGFR",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "308"
      },
      "pathwayName": "SHC1 events in EGFR signaling",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "309"
      },
      "pathwayName": "GAB1 signalosome",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "310"
      },
      "pathwayName": "GRB2 events in EGFR signaling",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "321"
      },
      "pathwayName": "Spry regulation of FGF signaling",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "323"
      },
      "pathwayName": "Negative regulation of FGFR signaling",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "331"
      },
      "pathwayName": "Signaling by EGFR",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "332"
      },
      "pathwayName": "Signal Transduction",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "338"
      },
      "pathwayName": "EGFR interacts with phospholipase C-gamma",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "467"
      },
      "pathwayName": "Signaling by PDGF",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "468"
      },
      "pathwayName": "Downstream signal transduction",
      "pathwaySource": "REACTOME",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1455"
      },
      "pathwayName": "Syndecan-1-mediated signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1460"
      },
      "pathwayName": "Glypican pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1462"
      },
      "pathwayName": "GMCSF-mediated signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1467"
      },
      "pathwayName": "Insulin Pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1470"
      },
      "pathwayName": "Stabilization and expansion of the E-cadherin adherens junction",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1473"
      },
      "pathwayName": "Nectin adhesion pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1481"
      },
      "pathwayName": "TRAIL signaling pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1482"
      },
      "pathwayName": "LPA receptor mediated events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1483"
      },
      "pathwayName": "IGF1 pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1491"
      },
      "pathwayName": "Syndecan-3-mediated signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1492"
      },
      "pathwayName": "Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met)",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1493"
      },
      "pathwayName": "Glypican 1 network",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1495"
      },
      "pathwayName": "N-cadherin signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1498"
      },
      "pathwayName": "PDGF receptor signaling network",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1500"
      },
      "pathwayName": "Integrin family cell surface interactions",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1508"
      },
      "pathwayName": "Regulation of Telomerase",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1510"
      },
      "pathwayName": "Internalization of ErbB1",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1513"
      },
      "pathwayName": "Posttranslational regulation of adherens junction stability and dissassembly",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1515"
      },
      "pathwayName": "Signaling events mediated by TCPTP",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1517"
      },
      "pathwayName": "Signaling events mediated by VEGFR1 and VEGFR2",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1518"
      },
      "pathwayName": "Beta1 integrin cell surface interactions",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1519"
      },
      "pathwayName": "Thromboxane A2 receptor signaling",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1520"
      },
      "pathwayName": "Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1530"
      },
      "pathwayName": "IFN-gamma pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1532"
      },
      "pathwayName": "PAR1-mediated thrombin signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1541"
      },
      "pathwayName": "PDGFR-beta signaling pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1545"
      },
      "pathwayName": "E-cadherin signaling in the nascent adherens junction",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1551"
      },
      "pathwayName": "EGF receptor (ErbB1) signaling pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1553"
      },
      "pathwayName": "Thrombin/protease-activated receptor (PAR) pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1554"
      },
      "pathwayName": "Class I PI3K signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1555"
      },
      "pathwayName": "Arf6 signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1557"
      },
      "pathwayName": "Plasma membrane estrogen receptor signaling",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1565"
      },
      "pathwayName": "IL3-mediated signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1572"
      },
      "pathwayName": "mTOR signaling pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1574"
      },
      "pathwayName": "ErbB receptor signaling network",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1575"
      },
      "pathwayName": "Signaling events mediated by focal adhesion kinase",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1576"
      },
      "pathwayName": "VEGF and VEGFR signaling network",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1579"
      },
      "pathwayName": "Alpha9 beta1 integrin signaling events",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1586"
      },
      "pathwayName": "Arf6 downstream pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1592"
      },
      "pathwayName": "Signaling events mediated by PTP1B",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1595"
      },
      "pathwayName": "S1P1 pathway",
      "pathwaySource": "NCI_NATURE",
      "pathwayVersion": "GRCH37.75_PATHWAY",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/50259"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "1600"
      },
      "pathwayName": "ATM pathway",
      "pathwaySource": "NCI_NATURE",
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