apiVersion: batch/v1
kind: Job
metadata:
  name: nextflow-job
  namespace: nextflow-ns
spec:
  template:
    spec:
      serviceAccountName: nextflow-sa
      containers:
      - name: nextflow
        image: nextflow/nextflow:22.10.6
        command:
          - nextflow
          - run
          - /workspace/main.nf
          - -config
          - /workspace/nextflow.config
        env:
        - name: NXF_K8S_IMAGE
          value: ubuntu:22.04
        - name: NXF_DEBUG
          value: "1"
        volumeMounts:
        - name: workdir
          mountPath: /work
        - name: pipeline-code
          mountPath: /workspace
        workingDir: /work
      restartPolicy: Never
      volumes:
      - name: workdir
        persistentVolumeClaim:
          claimName: nextflow-workdir
      - name: pipeline-code
        configMap:
          name: nextflow-code
  backoffLimit: 0