HGMD Loader
post
/ohfapi/omics/reference/hgmd
This API loads mutations and associated disease, drug, and other annotations from BIOBASE GFF formatted source files to ODB reference tables.
The following are the prerequisites:
- The format of the data files that are uploaded should be hgmd_ <dataFileSuffix>.gff. If you are using the file upload service to upload the file, the objectName should have this format.The <dataFileSuffix> is then provided in the HGMD Loader API.
- Upload the corresponding disease and drug files along with the data file and before invoking the Loader API.
For example, if you are uploading the hgmd_hg19.gff file, you should also upload the hgmd_disease_genes_hg19.gff and the drug_hg19.gff.
Request
Supported Media Types
- application/json
Root Schema : HgmdLoaderParam
Type:
Show Source
object-
dataFileSuffix:
string
Data File Suffix - This parameter should match with the <dataFileSuffix> part of the file name uploaded.
-
dnaReferenceVersion:
string
DNA Reference Version
-
hgmdReferenceVersion(optional):
string
HGMD Reference Version - The default value is null. Oracle recommends you to provide the appropriate hgmd version label.
-
readSize(optional):
integer(int64)
Read Size
-
speciesName(optional):
string
Species Name - The default value is 'Homo sapiens'.
Security
-
basicAuth: basic
Type:
basic
Response
Supported Media Types
- application/json
202 Response
Successful operation: Accepted
Location:/omics/jobstatus/{jobId}
500 Response
Error message object