The Domain home and bipublisher file paths are different in 12c as compared to the 11g system.
For Domain Home:
In 11g: mwhome/user_projects/domains/bifoundation_domain/
In 12c: ORACLE_HOME/user_projects/domains/bi/
For bipublisher folder:
In 11g: DOMAIN_HOME/config/bipublisher/
In 12c: DOMAIN_HOME/bidata/components/bipublisher/
Parent topic: Known Differences: Oracle Business Intelligence 12c