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6 Oracle Healthcare Foundation Omics Data Bank Loaders

This chapter contains the following topics:

• Section 6.1, "Prerequisites"

• Section 6.2, "Installing the Oracle Healthcare Foundation Omics Data Bank Loaders"

6.1 Prerequisites

To install Omics Data Bank Loaders, the Data Model must be installed. For Data Model installation instructions, see Chapter 2.

Installing Java

1. Download JRE 1.8 from http://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html

2. Install JRE on the system that you will use as the client tier. The EMBL and Swissprot loaders require JRE 1.8 to be installed on the machine from where they will be run.

3. Make sure that the path for Java 1.8 is set in the environment variable.

   Note:

   If you plan to execute multiple loaders, make sure that you execute each loader from a separate directory. You must copy .sh/.bat files to another directory to execute the loaders in parallel.

6.2 Installing the Oracle Healthcare Foundation Omics Data Bank Loaders

Copy the ODB Loaders folder or ODB_Loaders.zip file from <INSTALL_HOME>/.

If you are executing the loaders on an operating system that supports the bash shell command language, make sure that the .sh files have execute privileges.

For example,

chmod +x <filename>