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Contents

List of Tables

Title and Copyright Information

Preface

• Audience
• Disclaimer
• Documentation Accessibility
• Finding Information and Patches on My Oracle Support
• Finding Documentation on Oracle Technology Network
• Related Documents
• Conventions

1 EMR Configuration

• 1.1 Overview
• 1.2 Configuration
• 1.3 Configuring the OPSS Keystore
  • 1.3.1 Using the Enterprise Manager
  • 1.3.2 Using the WebLogic Scripting Tool
  • 1.3.3 Granting Permission to Use the Keystore

2 External System Configurations

• 2.1 Dalliance
  • 2.1.1 Dalliance Configuration
    • 2.1.1.1 Retrieving a List of Genome Configurations
    • 2.1.1.2 Adding a Genome Configuration
  • 2.1.2 Dalliance Configuration by Genome Version
    • 2.1.2.1 Retrieving Configuration for a Genome Version
    • 2.1.2.2 Updating an Existing Genome Configuration
    • 2.1.2.3 Deleting a Genome Version Configuration
• 2.2 Thomson Reuters
  • 2.2.1 Thomson Reuters Credential Configuration
    • 2.2.1.1 Retrieving a List of User Credentials Configured for Thomson Reuters
    • 2.2.1.2 Adding a User Credential for Invoking Thomson Reuters
    • 2.2.1.3 Updating Organization Level User Credentials for Invoking Thomson Reuters
    • 2.2.1.4 Deleting Organization Level User Credential U sed for Invoking Thomson Reuters
  • 2.2.2 User-Specific Thomson Reuters Credential Configuration
    • 2.2.2.1 Getting Credential Details for a User Configured for Thomson Reuters
    • 2.2.2.2 Updating User Credentials for Invoking Thomson Reuters
    • 2.2.2.3 Deleting User Credentials Used for Invoking Thomson Reuters
• 2.3 N-Of-One
  • 2.3.1 N-of-One Credential Configuration
    • 2.3.1.1 Getting Credentials Configured for N-of-One
    • 2.3.1.2 Adding a Credential for Invoking N-of-One
    • 2.3.1.3 Updating Credentials for Invoking N-of-One
    • 2.3.1.4 Deleting Credential Used for Invoking N-of-One
• 2.4 Enabling or Disabling Features Related to External Systems
  • 2.4.1 Returning State of Current Features
  • 2.4.2 Enabling or Disabling Features in Oracle Healthcare Precision Medicine

3 Published Report Template Configuration

• 3.1 Configuring the Logo in the Report Header and Footer
• 3.2 Configuring the Text in the Report Header and Footer

4 Annotation Pane Configuration

• 4.1 GET Annotation Pane Configuration
• 4.2 UPDATE Annotation Pane Configuration

5 Loader API

• 5.1 Fetch Job Status and Log
  • 5.1.1 Job Status
  • 5.1.2 Job Log
• 5.2 Data Ingestion with Loaders
  • 5.2.1 Preferred Transcript Loader

Index