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Retrieve Genes for an Assembly Identifier

get

/ohfapi/cg/v3.3/genes/byAssembly/{id}

This endpoint supports the retrieval of Genes for a Assembly/Alignment Identifier passed. It returns Gene information like Gene Name, HUGO Name, Assembly/Alignment, Chromosome and other Gene related information.

Request

Supported Media Types

• application/json
• application/xml

Path Parameters

• id: integer(int64)
  Minimum Value: 0

  Assembly ID

Query Parameters

• limit(optional): integer(int32)
  Number of rows to return
• offset(optional): integer(int32)
  Row number to start from

Security

• basicAuth: basic
  Type: basic

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Response

Supported Media Types

• application/json
• application/xml

200 Response

successful operation

Body ()

Root Schema : PageableCollection

Type: object

Model for paginated collections of data.

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• count(optional): integer(int64)
  Number of objects in the 'items' collection.
• hasMore(optional): boolean
  A boolean indicating if more pages are available.
• items(optional): array items
  A collection of paged items.
• links(optional): array links
  A collection of links containing hrefs to the current, next, and previous pages as applicable.
• resourceType(optional): string
  Identify the resource type

{
    "type":"object",
    "properties":{
        "resourceType":{
            "type":"string",
            "description":"Identify the resource type"
        },
        "items":{
            "type":"array",
            "xml":{
                "wrapped":true
            },
            "description":"A collection of paged items.",
            "items":{
                "$ref":"#/definitions/Serializable"
            }
        },
        "count":{
            "type":"integer",
            "format":"int64",
            "description":"Number of objects in the 'items' collection."
        },
        "hasMore":{
            "type":"boolean",
            "description":"A boolean indicating if more pages are available."
        },
        "links":{
            "type":"array",
            "example":"{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}",
            "xml":{
                "wrapped":true
            },
            "description":"A collection of links containing hrefs to the current, next, and previous pages as applicable.",
            "items":{
                "type":"string"
            }
        }
    },
    "description":"Model for paginated collections of data."
}

Nested Schema : items

Type: array

A collection of paged items.

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• Array of: object Serializable

{
    "type":"array",
    "xml":{
        "wrapped":true
    },
    "description":"A collection of paged items.",
    "items":{
        "$ref":"#/definitions/Serializable"
    }
}

Nested Schema : links

Type: array

A collection of links containing hrefs to the current, next, and previous pages as applicable.

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• Array of: string

{
    "type":"array",
    "example":"{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}",
    "xml":{
        "wrapped":true
    },
    "description":"A collection of links containing hrefs to the current, next, and previous pages as applicable.",
    "items":{
        "type":"string"
    }
}

Example:

{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}

Nested Schema : Serializable

Type: object

400 Response

Invalid parameters supplied

404 Response

Genes(s) not found

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Examples

The following example submits a GET request.

API URL

http://localhost:7010//ohfapi/cg/v3.3/genes/byAssembly/1

Example of Response Body

The following example shows the contents of the response body in JSON format:

{ 
 "resourceType": "Genes",
  "items": [
    {
      "identifier": {
        "system": "ODB",
        "value": "2"
      },
      "geneName": "ENSG00000223972",
      "hugoName": "DDX11L1",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/2"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "3"
      },
      "geneName": "ENSG00000227232",
      "hugoName": "WASH7P",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/3"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "4"
      },
      "geneName": "ENSG00000243485",
      "hugoName": "MIR1302-10",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/4"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "5"
      },
      "geneName": "ENSG00000237613",
      "hugoName": "FAM138A",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/5"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "6"
      },
      "geneName": "ENSG00000268020",
      "hugoName": "OR4G4P",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/6"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "7"
      },
      "geneName": "ENSG00000240361",
      "hugoName": "OR4G11P",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/7"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "8"
      },
      "geneName": "ENSG00000186092",
      "hugoName": "OR4F5",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/8"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "9"
      },
      "geneName": "ENSG00000238009",
      "hugoName": "RP11-34P13.7",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/9"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "10"
      },
      "geneName": "ENSG00000239945",
      "hugoName": "RP11-34P13.8",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/10"
      }
    },
    {
      "identifier": {
        "system": "ODB",
        "value": "11"
      },
      "geneName": "ENSG00000233750",
      "hugoName": "CICP27",
      "assembly": "GRCh37",
      "chromosome": "1",
      "geneReference": {
        "reference": "/ohfapi/cg/v3.3/genes/11"
      }
    }
    }
  ],
  "count": 10,
  "hasMore": true,
  "links": [
    {
      "rel": "self",
      "href": "http://localhost:7010/ohfapi/cg/v3.3/genes/byAssembly/1"
    },
    {
      "rel": "next",
      "href": "http://localhost:7010/ohfapi/cg/v3.3/genes/byAssembly/1?offset=10"
    }
  ]
}

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