Retrieve Genes for Chromosome
get
/ohfapi/cg/v3.3/genes/byChromosome/{name}/{id}
This endpoint supports the retrieval of Genes for Chromosome Name, Start Position, End Position and Assembly/Alignment Identifier passed. It returns Gene information like Gene Name, HUGO Name, Assembly/Alignment, Chromosome and other Gene related information.
Request
Supported Media Types
- application/json
- application/xml
Path Parameters
-
id: integer(int64)
Minimum Value:
0
AlignmentWid -
name: string
chromosomeName
Query Parameters
-
end_pos(optional): integer(int64)
Minimum Value:
0
end_position -
limit(optional): integer(int32)
Number of rows to return
-
offset(optional): integer(int32)
Row number to start from
-
start_pos(optional): integer(int64)
Minimum Value:
0
start_position
Security
-
basicAuth: basic
Type:
basic
Response
Supported Media Types
- application/json
- application/xml
200 Response
successful operation
Root Schema : PageableCollection
Type:
object
Model for paginated collections of data.
Show Source
-
count(optional):
integer(int64)
Number of objects in the 'items' collection.
-
hasMore(optional):
boolean
A boolean indicating if more pages are available.
-
items(optional):
array items
A collection of paged items.
-
links(optional):
array links
A collection of links containing hrefs to the current, next, and previous pages as applicable.
-
resourceType(optional):
string
Identify the resource type
Nested Schema : links
Type:
array
A collection of links containing hrefs to the current, next, and previous pages as applicable.
Show Source
Example:
{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}
Nested Schema : Serializable
Type:
object
400 Response
Invalid parameters supplied
404 Response
Genes(s) not found
Examples
The following example submits a GET request.
API URL
http://localhost:7010/ohfapi/cg/v3.3/genes/byChromosome/1/1?start_pos=1000&end_pos=3000&limit=10&offset=0
Example of Response Body
The following example shows the contents of the response body in JSON format:
{ "resourceType": "Genes", "items": [ { "identifier": { "system": "ODB", "value": "33687" }, "geneName": "ENSG00000211459", "hugoName": "MT-RNR1", "assembly": "GRCh37", "chromosome": "MT", "geneReference": { "reference": "/ohfapi/cg/v3.3/genes/33687" } }, { "identifier": { "system": "ODB", "value": "33688" }, "geneName": "ENSG00000210077", "hugoName": "MT-TV", "assembly": "GRCh37", "chromosome": "MT", "geneReference": { "reference": "/ohfapi/cg/v3.3/genes/33688" } } ], "count": 2, "hasMore": true, "links": [ { "rel": "self", "href": "http://localhost:7010/ohfapi/cg/v3.3/genes/byChromosome/1/1?start_pos=1000&end_pos=3000&limit=2&offset=0" }, { "rel": "next", "href": "http://localhost:7010/ohfapi/cg/v3.3/genes/byChromosome/1/1?offset=2&end_pos=3000&limit=2&start_pos=1000" } ]}