Installing the Middle-Tier on the Primary Node

Complete the following:

Check Prerequisites

- Steps

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Oracle Fusion Middleware Infrastructure 12.2.1.4 is installed on the machine (see Software Requirements).

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There is no Oracle WebLogic Server domain named "oh_domain" on the machine.

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All of the Oracle Healthcare Foundation Data Model schemas exist.

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The Oracle external table DIRECTORY object is created for Omics Data Bank.

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If you have already installed Oracle Healthcare Foundation 7.0.1 or 7.1 Middle-Tier components on Oracle WebLogic Server 12.1.3, uninstall the existing oh_domain and applications and install Oracle WebLogic Server 12.2.1.4.

Prepare the Installer

- Steps

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Extract the contents of the Oracle Healthcare Foundation media pack to your system.

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Open the media_pack_location/ folder.

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Unzip the OHF_V821_Linux-x64.zip file where you want to launch the installer using the following command:

unzip -a OHF_V821_Linux-x64.zip

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Open the Disk1/install folder.

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Change the protection on the files as follows:

chmod 755 *

Run the Installer

Start the Oracle Universal Installer (OUI) by running the following command.

./runInstaller

- Screen Action

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Welcome

Click Next.

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Select a Product to Install

Select the Oracle Healthcare Foundation Middle-Tier 8.2.2.0.0 option

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Specify Home Details

Enter the Middle-Tier install home name and location.

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Choose Install Type

Select Yes to perform a fresh installation.

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Verify Install Prerequisites

Verify if all of the prerequisites are met.

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Java Home

Specify the JDK installation path. The installer validates this path.

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Fusion Middleware Home

Specify the Oracle WebLogic Server with ADF installation path. The installer validates this path.

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Cluster Configuration

Select Yes to create a domain and make the machine a primary node where the Oracle WebLogic Server AdminServer is located.

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AdminServer Configuration

Enter values for the following fields:

  • Listen address
  • Listen port
  • SSL listen port
  • User name - Oracle WebLogic Server administrator user
  • Password - Oracle WebLogic Server administrator password

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NodeManager Configuration

Enter values for the following fields:

  • Listen address
  • Listen port
  • User name - Node manager administrator user
  • Password - Node manager administrator password
  • Verify password

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Managed Server Configuration

Enter values for the following fields:

  • Number of Managed Servers on this machine
  • Managed Servers listen port start index - This is used as a starting point for incrementing the port numbers. For example, if the number of managed servers is 3, and the listen port start index is 8081, three managed servers with listen ports 8081, 8082, and 8083 are created.

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FMW Repository Creation Utility (RCU) Configuration

The Fusion Middleware (FMW) RCU requires an Oracle Database user with DBA or SYSDBA privileges. Using the installer, you can create new RCU repositories, or use pre-created repositories using the WebLogic RCU utility.

If you want to create RCU schemas outside installer refer to: https://docs.oracle.com/middleware/1213/core/RCUUG/rcu.htm#RCUUG325 for more details.

  • Database host
  • Database port
  • Service name
  • Schema prefix
  • DBA user name - This field is optional if the RCU repositories are pre-created using the RCU utility
  • DBA password - This field is optional if the RCU repositories are pre-created using the RCU utility
  • Schemas common password

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Oracle Healthcare Foundation Data Model Configuration - part 1

Enter values for the following fields:

  • Database host name - By default, the system host name appears. For remote installations, set this value to the host name of the remote machine.
  • Database port
  • Service name

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Oracle Healthcare Foundation Data Model Configuration - part 2

Enter values for the following fields:

  • Omics Data Bank schema name
  • Omics Data Bank schema password
  • Services schema name
  • Services schema password
  • HDM schema name
  • HDM schema password
  • Enterprise schema name
  • Enterprise schema password

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Oracle Healthcare Foundation Data Model Configuration - part 3

Enter values for the following fields:

  • Cohort Data Mart (CDM) schema name
  • Cohort Data Mart (CDM) schema password
  • Clinical Genomics (cga) schema name
  • Clinical Genomics (cga) schema password

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Service Configuration

  • To provide the service configuration now, select Yes and click Next to go to the next step (File Upload Service Configuration).
  • To provide the service configuration after the installation, select No and click Next to proceed to the Summary screen.

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File Upload Service Configuration

Enter values for the following fields:

  • File retention period in days
  • File storage location
  • Max file size in MB
  • Max zip extract size in MB
  • Simultaneous upload limit

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Omics Loader Service Configuration

Enter values for the following fields:

  • Oracle data directory object
  • Ensembl and SwissProt directory

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Summary

Click Install.

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End of Installation

Click Exit after reviewing the installation information. At the confirmation prompt, click Yes to exit the installer.

Check the Installation

- Steps

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Check the log file located in ORACLE_BASE/oraInventory/logs.

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Review the generated installation log files for errors. For details, see Middle-Tier Troubleshooting.

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Contact Oracle support, if necessary, to resolve any errors.