REST API for Oracle Healthcare Translational Research

Gene REST Endpoints

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature