REST API for Oracle Healthcare Translational Research

Retrieve misc_feature Components for a Gene Identifier and Structure Identifier

get

/HSDataService-web/api/3.2.0/genes/{id}/{structure}/components/misc_feature

This endpoint supports the retrieval of misc_feature Components for a Gene Row ID and Structure Row ID passed. It returns misc_feature Component information like Gene name, Ensembl Version, Transcript Identifier, Component Name, Component Identifier, Genomic Positions, Strand and other misc_feature Component associated information.

Request

Supported Media Types

application/json
application/xml

Path Parameters

id: Type: integer (int64)

Required: true

gene row ID
structure: Type: integer (int64)

Required: true

structure row ID

Query Parameters

limit: Type: integer (int32)

Number of rows to return
offset: Type: integer (int32)

Row number to start from

Response

Supported Media Types

application/json
application/xml

200 Response

successful operation

Body

Model for paginated collections of data.

Root Schema : PageableCollectionGeneComponentSource

Type: object

Model for paginated collections of data.

Properties

count: Type: integer (int64)

Number of objects in the 'items' collection.
hasMore: Type: boolean

Default Value: false

A boolean indicating if more pages are available.
items: Type: array items

A collection of paged items.
links: Type: array links

A collection of links containing hrefs to the current, next, and previous pages as applicable.
resourceType: Type: string

Identify the resource type

Nested Schema : items

Type: array

A collection of paged items.

Items

Type: object GeneComponentSource

Nested Schema : links

Type: array

A collection of links containing hrefs to the current, next, and previous pages as applicable.

Example

{rel: 'next',href: '/patientapi/patients?limit=100&offset=300'}

Items

Type: string

Nested Schema : GeneComponentSource

Type: object

Properties

componentSource: Type: object Transcript
ensemblVersion: Type: string

Ensembl Version. For ex.,GRCH37.75
geneName: Type: string

Gene Name. For ex.,RN5S300
geneReference: Type: object LinkedReference
identifier: Type: object Identifier

Identifier assigned by a given system

Nested Schema : Transcript

Type: object

Properties

componentTypes: Type: array componentTypes

List of Component Types
transcriptId: Type: string

Transcript ID

Nested Schema : LinkedReference

Type: object

Properties

display: Type: string
reference: Type: string

Nested Schema : Identifier

Type: object

Identifier assigned by a given system

Properties

system: Type: string

System which assigned this identifier
value: Type: string

Identifier value

Nested Schema : componentTypes

Type: array

List of Component Types

Items

Type: string

400 Response

Invalid parameters supplied

404 Response

Gene misc_feature component(s) not found

Examples

The following example submits a GET request.

API URL

http://localhost:7001/HSDataService-web/api/3.2.0/genes/50259/components/misc_feature

Example of Response Body

The following example shows the contents of the response body in JSON format:

{
  "resourceType": "GeneComponents",
  "items": [
    {
      "identifier": {
        "system": "ODB",
        "value": "225728"
      },
      "geneName": "ENSG00000146648",
      "ensemblVersion": "GRCH37.75",
      "componentSource": {
        "componentType": [
          {
            "componentName": "misc_feature",
            "componentId": 1193144,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55302533,
                "endPosition": 55302859,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193147,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55300931,
                "endPosition": 55301216,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193150,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55279147,
                "endPosition": 55279243,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193152,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55279028,
                "endPosition": 55279170,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193155,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55278846,
                "endPosition": 55278970,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193157,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55275980,
                "endPosition": 55276261,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193160,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55275586,
                "endPosition": 55275693,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
          {
            "componentName": "misc_feature",
            "componentId": 1193163,
            "genomicPosition": [
              {
                "chromosome": "7",
                "startPosition": 55275394,
                "endPosition": 55275702,
                "strand": "-",
                "numberInSequence": 1
              }
            ]
          },
      "geneReference": {
        "reference": "/HSDataService-web/api/3.2.0/genes/50259"
      }
    }
  ],
  "count": 1,
  "hasMore": false,
  "links": [
    {
      "rel": "self",
      "href": "http://localhost:7001/HSDataService-web/api/3.2.0/genes/50259/components/misc_feature"
    }
  ]
}