Index

A C D E F G L M N O P Q R S U V

A

Aggregate Tables for Gene Expression, 1.6

C

Comparing Genomic Coordinates to Reference, 7.8.2

Creating Custom Gene Components, 7.8

Creating Custom Gene Region Views, 7.8.1

Custom Format Specification in VCF, 4.5.2

D

Documentation, Preface

Related Documents, Preface

E

Errors

Copy Number Variation Loader, 4.13.8

Dual Channel Gene Expression Loader, 4.13.6

File Lineage Linker, 4.13.9

MAF Loader, 4.13.4

RNA-seq Loader, 4.13.7

Single Channel Gene Expression Loader, 4.13.5

VCF Loader, 4.13.2

Exadata versus Non-Exadata, 7.9

F

File and File Load Tables, 1.7

G

gVCF Loader, 4.5.1.2

L

Loader Activity Logging, 7.5

Logging Table, 1.5

M

Mitochondrial Chromosome Mappings, 7.3

Model Dictionary, 5

N

Newline Characters, 2.7

O

OHSODB

Integration with External Data Model, 2.4

Logical Data Model, 1.2

Oracle Optimizer Statistics, 4.14

Oracle Wallet, 2.2

P

Patches, Preface, Preface

Product Version and Product Profile Including Flanking Offsets, 7.1

Promoter Offset, 7.4

Q

Querying Database Cross-References for Variations, 7.2

R

Reference Data, 1.1.1

Ensembl and SwissProt Loaders (Java), 3.1

Files to Load, 3.1.2

Installing Loader, 3.1.1

Loading the Data, 3.1.3

GVF Ensembl Loader (PLSQL), 3.3

HUGO Loader (PLSQL), 3.2

Pathway Loader, 3.4

Tables, 1.3

Reference Version Compatibility, 2.6

Result Data, 1.1.2

Prerequisites, 4.1

Setting Default Cache Sizes, 4.1.1

Tables, 1.4

Version Check Utility, 4.3.2

Version Information Utility, 4.3

Result Loader

Copy Number Variation Loader, 4.9

Dual Channel Loader, 4.11

File Lineage Linker, 4.8.2

File Specimen Loader, 4.8

MAF Sequence Data Loader, 4.6

Quality Control Metadata Loader, 4.12

RNA-Seq Loader, 4.7

Single Channel Gene Expression Loader, 4.10

VCF Sequence Data Loader, 4.5

Result Tables for Differential Expression, 1.4.2

Result Tables for Qualifier Metadata, 1.4.1

S

Setting up a Directory Object, 2.1

U

UNDO Tablespace Auto-extendable Issue, 7.10

Use Case Examples, 6

Use Cases

OHSODB, 6.1

User Feedback for Loader Runs, 7.6

User Privileges for Querying or Loading Data, 2.3

V

VCF Loader Log, 7.7

VCF Sequence Data Loader

1000 genomes VCF4.1 Version, 4.5.1.1