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Oracle® Health Sciences Data Management Workbench User's Guide
Release 2.3.1

Part Number E35217-02
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Index

A  B  C  D  E  F  G  H  I  J  L  M  N  O  P  Q  R  S  T  U  V  W 

A

actions
applying to a discrepancy, 12.1.2
creating custom, 7.4.1
editing, 7.4.1
menu label, 7.4.1
on discrepancies, 7.2
predefined, 7.3.1
result state, 7.4.1
result tag, 7.4.1
routing operation, 7.4.1
start state, 7.4.1
start tag, 7.4.1
activities
running transformations, 10.4
running validation checks, 10.4
add comment to discrepancies, 12.1.1
alias
column, 3.3.4
table, 3.3.2
allow autoclose, validation checks, 6.3.2
Answered discrepancy state, 7.3.1
autoclose
applying to a discrepancy, 12.1.2

B

bitmap index constraints, 3.4
blinding See data blinding, 3.1.2

C

Cancelled discrepancy state, 7.3.1
Candidate discrepancy state, 7.3.1
categories
creating, 8.6
discrepancies, 12.1.2
validation checks, 6.3.2
changing user interface display, 10.7
check constraints, 3.4
clinical data models, 3, 3.1
creating in library, 4.2
creating in study, 3.2
editing, 3.10
installability, 3.2
installation, 3.1.1
mapping, in transformations, 5.2.1
modifying, 3.10
requirements, 3.1.3
Closed discrepancy state, 7.3.1
column mappings
complex, 5.5
column order, changing user interface display, 10.7.3
columns
adding to a table, 3.3.4
default value attribute, 3.3.4
length attribute, 3.3.4, A.1.2
mapping, in transformations, 5.2.3
masking attributes, 3.3.6
nullable attribute, 3.3.4
Oracle name attribute, 3.3.4, A.1.2.2
precision attribute, 3.3.4
SAS format attribute, 3.3.4
SAS label attribute, 3.3.4
SAS name attribute, 3.3.4, A.1.2.2
SDTM identifier attribute, 3.3.4, 3.3.5
showing and hiding in user interface display, 10.7.2
comments, 12.1.1
conformance checks See validation checks and See data loading, 6.1
connect string, 3.6.1, 8.2.1
constraints
adding to a table, 3.4
bitmap index, 3.4
check, 3.4
Not Null, 3.4
primary key, 3.4
unique key, 3.4
continue on error, validation checks, 6.3.2
custom actions, creating, 7.4
custom discrepancy workflows, creating, 7.4
Custom Listings page, 11.3
custom listings, creating, 11.3
custom transformation type, 5.4.6
custom transformations, 5.11
context, 5.11.2
lineage tracing, 5.11.2
custom validation checks, 6.7

D

data and metadata loading, 3.6
data blinding, 3.1.2
authorizing nonblinded downstream tables, 3.1.2.2
blinding criteria, 3.3.3.2
column masking attributes, 3.3.6
InForm hidden data, 3.1.2.1
maintaining in subsequent clinical data models, 3.1.2.2
setting attributes in manually created tables, 3.3.3.2
setting attributes in tables uploaded from SAS files, 3.1.2.1, 3.3.3.2
setting attributes in text metadata files, 3.1.2.1, A.2
table attributes, 3.3.3.2
unblinding tables, 3.1.2.4
viewing blinded data, 11.11
Data Change Date filters, 11.4.5
data lineage
how the system tracks, 5.12
in custom transformations, 5.11.2
viewing, 11.10
data loading
configuring File Watcher, 3.7
format checks, 9.4.3
monitoring, 10.3
processing modes, 9.4.1
SAS file data load parameters, 3.7.2
scheduling InForm, 3.6, 3.6.3.2
text file data load parameters, 3.7.3
data loading, InForm, 3.6
data models See clinical data models, 3
data processing
full reload processing, 9.1.1.1
full Unit of Work, 9.1.2.1
incremental reload processing, 9.1.1.2
incremental Unit of Work, 9.1.2.2
modes, 9.1
reload processing, 9.1.1
Unit of Work, 9.1.2
data review flags, 8.8
data sources
adding to list, 8.1
data visualization tool, integrating with DMW, 8.16
Default Listings page, 11.1
default value column attribute, 3.3.4
deleting data
data processing modes, 9.1
UOW Load, 9.1.2.3
delimited text data load parameters, 3.7.3
deployment See installation, 3.2
detaching a pane in the user interface display, 10.7.5
details, discrepancy, 12.3
detected files, File Watcher, 3.7.7
direct transformation type, 5.4.1
discrepancies
acting on a single discrepancy, 12.1.2
action, 12.1.2
actions, 7.2
Add Comment, 12.1.1
Answered state, 7.3.1
autoclose, 12.1.2
Cancelled state, 7.3.1
Candidate state, 7.3.1
categories, 12.1.2
categories, creating, 8.6
Closed state, 7.3.1
creating manually, 11.6
custom workflows, 7.4
definition, 1.2.1, 12
details, 12.3
display full record for a discrepancy, 12.5
Export to Excel, 12.1.1
history, 12.4
icons, 12.1.3
identifying, 1.2.1
managing, 12.1
Open state, 7.3.1
raised in DMW on InForm data, 7.1.2
reason for action, 12.1.2
routing operation, 7.3.1
selecting multiple, 12.1.1
Set State, 12.1.1
states and transitions, 7.1, 7.3.1
tags, 8.7
unread, 12.1.2
workflows, 7.3.2
Discrepancy Category filters, 11.4.6
Discrepancy Change Date filters, 11.4.7
discrepancy field, 12.1.2
discrepancy initial action, validation checks, 6.3.2
discrepancy initial state, validation checks, 6.3.2
discrepancy management
automated closure, 6.1
manual closure, 6.1
validation checks, 6.1
Discrepancy State Date filters, 11.4.8
discrepancy text, 12.1.2
discrepancy text, validation checks, 6.3.2
display
changing column order, 10.7.3
changing sort order, 10.7.1
changing user interface, 10.7
detaching a pane, 10.7.5
freezing columns, 10.7.4
showing and hiding columns, 10.7.2
display full record, 12.5
DP Server, See Distributed Processing Server See also the Oracle LSH System Administrator's Guide, 8.4.2
duplicate name handling, A.1.3

E

edit checks See validation checks, 6.1
execution order, validation checks, 6.3.2
execution set in UOW processing, 9.1.2
Export All to Excel, 11.12
export discrepancies to Excel, 12.1.1
Export to Excel, 12.1.1
Expression Builder for transformations and validation checks, 5.5

F

file specification, File Watcher, 3.7.4
File Specifications
file name pattern, 3.7.4
File Watcher
about, 3.7
configuring, 3.7
configuring for input clinical data models, 3.7.1
creating for study, 8.4.1
detected files, 3.7.7
Distributed Processing (DP) Server, 8.3.4
file specifications, 3.7.4
migrating to 2.3.1, 3.7.6
restarting, 8.5.2.1
root folders, 8.3.1
service, 8.3.3
setting up for the DMW instance, 8.3
study folders, 8.3.2
submission modes, 3.7.4
suspending and resuming data loading in Admin page, 8.5.2.2
suspending and resuming data loading in model, 3.7.5
File Watcher file specifications
file name, 3.7.4
filters
creating and using, 11.4
Data Change Date, 11.4.5
Discrepancy Category, 11.4.6
Discrepancy Change Date, 11.4.7
Discrepancy State Date, 11.4.8
Subject, 11.4.1
Visit, 11.4.2
Visit Date, 11.4.4
Visit Day, 11.4.3
filters See also querying by example, 10.8
Find in Listings page, 11.5
fixed text data load parameters, 3.7.3
flags
categories, 8.6
creating, 8.8.1
for subject visit tracking and data review, 8.8
InForm status, 11.8
rules, 8.8.2
format checks during data loading, 9.4.3
freezing columns in user interface display, 10.7.4
full record display, 12.5
full reload processing, 9.1.1.1
full Unit of Work, 9.1.2.1

G

Generic Visualization Business Area, 8.16

H

help, online, 10.9
history, discrepancy, 12.4

I

icons
discrepancies, 12.1.3
incremental reload processing, 9.1.1.2
incremental Unit of Work, 9.1.2.2
InForm, 1.3, 3.6
adding a remote location, 3.6.1, 8.2.1
adding a web service location, 3.6.2, 8.2.2
configuring the InForm Connector, 3.6
connect string, 3.6.1, 8.2.1
flags, 11.8
hidden data, 3.1.2.1
loading data immediately, 3.6.3
metadata loading and synchronization, 3.6.4
scheduling data loads, 3.6, 3.6.3.2
suspending and resuming data loading, 3.6.3.1
installation, 3.1.1
clinical data models, 3.2
transformations, 5.7
validation checks, 6.4
integration with
InForm, 1.3
labs, 1.4
LSH, 1.8

J

job statuses, 10.3
jobs, monitoring, 10.3
join transformation type, 5.4.2

L

labs, 1.4
libraries, 2.1
library
clinical data models, 4.1
code lists, 4.3
library names, A.1.4
library of SQL functions, 5.5.4
life cycle mode
selecting, 10.2
life cycle mode See also validation status, 10.2
Life Sciences Data Hub
creating custom program for transformation, 5.11
creating custom program for validation check, 6.7
object ownership, A.3
SQL function library, 5.5.4
lineage
See data lineage, 5.11.2
loading data
File Watcher, suspending and resuming, 8.5.2.2
InForm, immediate, 3.6.3
InForm, suspending and resuming, 3.6.3.1
processing modes, 9.4.1
LSH See Life Sciences Data Hub, 1.8

M

mappings
automatic, 5.2.2.2
manual, 5.2.2.3
validating, 5.6
menu label, actions, 7.4.1
metadata loading, 3.6
from files, 3.2
InForm, 3.6.4
required syntax, A.2
models See clinical data models, 3
monitoring data loading, 10.3

N

name
avoid reserved words, A.1
avoid special characters, A.1
customizable package, A.1
duplicate, A.1
guidelines, A.1
length, A.1
libraries, A.1
studies, A.1
non-unique index, 3.4
nullable, 3.3.4

O

online help, 10.9
Open discrepancy state, 7.3.1
Oracle Life Sciences Data Hub See Life Sciences Data Hub, 1.8

P

pane, detaching, 10.7.5
pivot transformation type, 5.4.4
preferred path, 11.10, 11.10
setting, 5.2.3
primary key
about, 3.4
in data lineage display, 11.10
Supports Duplicate attribute, 3.4
primary source column, validation checks, 6.3.2
primary source table, validation checks, 6.3.2

Q

query, InForm See discrepancies, 1.2.1
querying by example, 10.8

R

reason for action
apply to a discrepancy, 12.1.2
record, display full, 12.5
reload processing
about, 9.1.1
full, 9.1.1.1
incremental, 9.1.1.2
remote location, adding, 3.6.1, 8.2.1
Remote Study Account Name, 3.6
required syntax in text metadata files, A.2
reserved words, avoid in names, A.1.1
result state, actions, 7.4.1
result tag, actions, 7.4.1
review flags, 8.8
reviewing data
Default Listings page, 11.1
Listings pages, 11
reviewing discrepancies
Custom Listings page, 11.3
Validation Check Listings page, 11.2
routing operations
about, 7.3.1
actions, 7.4.1

S

SAS
custom program, 5.11
SAS files
data load parameters, 3.7.2
SDTM identifier, 3.3.4, 3.3.5
security
adding and removing user group assignments, 3.9
applying to objects, 3.9
See also the Security Guide, 3.1.2.2
Set State of discrepancies, 12.1.1
Show Discrepancies button, 11.7
single discrepancy actions, 12.1.2
sort order, changing, 10.7.1
source-dependent transformations, 5.2.2.5
source-independent transformations, 5.2.2.5
special characters, avoid in names, A.1.1
SQL expressions
in transformations and validation checks, 5.5
SQL functions
library, 5.5.4
staging layer, 5.2.2.5
staging tables, 5.2.2.5
start state, actions, 7.4.1
start tag, actions, 7.4.1
statuses, job, 10.3
studies
Active attribute, 2.2.1
components, 2.1
Template attribute, 2.2.1
Therapeutic Area or Category attribute, 2.2.1
studies, creating a study, 2.2.1
studies, selecting a study to work in, 10.1
study clinical data models, 3.1
study File Watcher, creating, 8.4.1
study names, A.1.4
study templates, 2.1
Subject filters, 11.4.1
subject table, adding to model, 3.5
subject visit completeness flags, 8.8
subject visit table, adding to model, 3.5
submission modes, File Watcher, 3.7.4
Supports Duplicate
in transformations, 5.2.2.5
table attribute, 3.4
surrogate key
in custom transformations, 5.11.2
in data lineage tracing, 5.12
syntax
required in metadata files, A.2
syntax for text metadata files, A.2

T

tables
adding columns, 3.3.4
alias, 3.3.2
blinding attributes, 3.3.3.2
constraints, 3.4
creating from a file, 3.3.1
creating manually, 3.3.2
editing, 3.3.2
installability, 3.2
mapping, in transformations, 5.2.2
modifying, 3.3.2
transformation types, 5.4
tag
result tag in actions, 7.4.1
routing operation in actions, 7.4.1
start tag in actions, 7.4.1
tags, discrepancies, 8.7
template, study, 2.2.1
text files
data load parameters, 3.7.3
therapeutic area category, 2.2.1
Trace Data Lineage, 11.10
Trace Data Lineage display explanation, 11.10
transformation types, 5.4
custom, 5.4.6
direct, 5.4.1
join, 5.4.2
pivot, 5.4.4
union, 5.4.3
unpivot, 5.4.5
transformations
column-level mappings, 5.2.3
model-level mappings, 5.2.1
running, 10.4
source-dependent, 5.2.2.5
source-independent, 5.2.2.5
SQL expressions, 5.5
staging layer, 5.2.2.5
table-level mappings, 5.2.2
types, 5.4
Transformations
about, 5.1
truncation, automatic name, A.1.2.2

U

union transformation type, 5.4.3
unique key constraints, 3.4
Unit of Work
File Watcher submission, 3.7.4
full, 9.1.2.1
incremental, 9.1.2.2
processing, 9.1.2
UOW Load processing mode, 9.1.2.3
unpivot transformation type, 5.4.5
unread
apply to a discrepancy, 12.1.2
UOW key, 9.1.2
UOW See Unit of Work, 3.3.2
user groups
assigning to objects, 3.9
See also the Security Guide, 3.9
user interface
changing column order, 10.7.3
changing display, 10.7
changing sort order, 10.7.1
detaching a pane, 10.7.5
freezing columns, 10.7.4
showing and hiding columns, 10.7.2

V

validating mappings, 5.6
validation check batch
Execution Order attribute, 6.3.2
reordering, 6.6.1
validation check batches, 6.2
Validation Check Listings page, 11.2
validation checks, 6
allow autoclose, 6.3.2
batches, 6.2
categories, creating, 8.6
category, 6.3.2
continue on error, 6.3.2
creating, 6.3, 6.3.2
creating joins, 6.3.1.2
custom, creating, 6.7
disabling, 6.6.2
discrepancy initial action, 6.3.2
discrepancy initial state, 6.3.2
discrepancy text, 6.3.2
editing, 6.6
execution order, 6.3.2
modifying, 6.6
primary source column, 6.3.2
primary source table, 6.3.2
running, 10.4
selecting columns, 6.3.1.1
SQL expressions, 5.5
upgrading, 6.6.3
validation status
introduction, 3.8
life cycle, 2.3
updating, 3.8
validation, custom naming package, A.1.5
VC Listings See Validation Check Listings page, 11.2
viewing data
Default Listings page, 11.1
Listings pages, 11
tracing data lineage, 11.10
viewing discrepancies
Custom Listings page, 11.3
Validation Check Listings page, 11.2
Visit Date filters, 11.4.4
Visit Day filters, 11.4.3
Visit filters, 11.4.2

W

web service location, InForm, 3.6.2, 8.2.2
workflows, discrepancy, 7.3.2