6 Patient Viewer

This chapter describes the patient viewer tab in OHPM. It contains the following sections:

Section 6.1, "Introduction"
Section 6.2, "Viewing Patient Details"

6.1 Introduction

This tab lets you view detailed patient information.

When you click the Patient Viewer tab from the reporting view, you will not see patient details. You must search for the patient to see their details.

6.2 Viewing Patient Details

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Enter a patient ID in the Patient field. A drop-down list displays matching results.

You can search for a patient by clicking the Search icon.
Select the Clinical Data and Genomic Data categories you want to view for the patient.
Click Submit. The patient data is displayed.

You can export information from each of these reports to a Microsoft Excel format by clicking Export.

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6.3 Reports Available in the Patient Viewer

The following reports can be viewed for a patient in the patient viewer.

Clinical Data

Demographics
Diagnosis
Procedure
Medications Taken
Test or Observation
Specimen Samples Collected
Clinical Encounter
Patient History
Consent

Genomic Data

Genomic Reports
Specimen with Genomic Results
Derived Files
File Lineage

6.3.1 Clinical Data

The attributes displayed for each section are listed below:

Demographics

Patient ID, First Name, Last Name, Gender, Marital Status, Related Patients, Age, Date of Birth, Deceased, Deceased Date, Ethnicity, Race, Street Address, City, Zip code, County, State, Country
Diagnosis

Diagnosis Name, Code, Age at First Onset (in Years), Onset Date, Date Reported, End Date, Status, Anatomical Site Name, Anatomical Site Code, Data Source
Procedure

Procedure Name, Procedure Code, Procedure Type, Type Code, Start Date, End Date, Outcome, Anatomical Site Name, Anatomical Site Code, Data Source
Medications Taken

Medication Name, Medication Code, Description, Start Date, End Date, Dosage, Dosage Units, Outcome, Data Source
Test or Observation

Test or Observation Name, Test or Observation Code, Type, Date, Numeric Result (Units) [Reference Range], Result (text), Data Source
Specimen Samples Collected

Specimen Type Name, Specimen Type Code, Date Collected, Anatomical Site Name, Anatomical Site Code, Amount, Units, Data Source
Clinical Encounter

Encounter Id, Encounter Type, Start Data, End Date, Additional Details (clicking this provides more details about the encounter like Event Name, Event Type, Start Date, End Date, Location Name (Location Type)), Data Source
Patient History

History or Risk Name, History or Risk Code, Type, Start Date, End Date, Frequency (Units), Amount (Units), Text Value of Code, Applicable To, Data Source
Consent Forms Signed

Consent Type Name, Consent Type Code, Description, Consent Status Name, Status Code, Start Date, End Date, Data Source

6.3.2 Genomic Data

Genomic data is displayed in four sections as follows:

Table 6-1 Genomic Report

Column Heading	Definition	Sample Value or Values
Report Id	Report Name	Titled Report
Diagnosis	Diagnosis in the order	Diverticulitis
Genetic Test	Genomic tests performed	Panel_13
Report Author	User that created the report	user1
Publish Date	Date the report was published	6/20/2016
Order ID (Lab)	Order ID from the lab	Order1

Table 6-2 Specimens with Genomic Results

Column Heading	Definition	Sample Value or Values
Specimen Id	Specimen belonging to the selected patient or subject	HG00096
Specimen Vendor Id	Specimen Vendor for that specimen	Vcf
Version Label	Represents Assembly Version (DNA reference version against which this data was loaded)	GRCh37(V68)
Sequence Variants Results	Whether the sample has sequence variants results	Yes / No
Copy Number Variation Results	Whether the sample has copy number variants results	Yes / No
Single Channel Microarray Results	Whether the sample has single channel results	Yes / No
Dual Channel Microarray Results	Whether the sample has dual channel results	Yes / No
Rna-Seq Expression Results	Whether the sample has rna sequencing results	Yes / No

Table 6-3 Derived Files

Column Heading	Definition	Sample Value or Values
Filename	Filename including path of the genomic file stored including path	C:/John_specimen01.vcf
File Size in MB	Size of the File in MB	Numeric, positive integer
File URI	URI of the file	File://trc/abc.maf
Alternate Filepath	The FTP path of the file
File Type, Version	Type of file and Version	Variant Call Format, 4.1
Result Type	Type of result data in the file	Sequencing, Copy Number Variation, Gene Expression (2-channel or single channel)
Alignment Version (DNA Reference Version)	Represents Assembly Version (DNA reference version against which this data was loaded)	GRCh37(v68)
Total Number of Specimen in File	Total number of specimen that the file contains where not all specimen belong to the selected patient	Numeric, positive integer
Last Updated	When record was last updated	19-Mar-2012

Table 6-4 File Lineage

Column Heading	Definition	Sample Value or Values
Parent Filename	Parent Filename including path of the genomic file stored including path	C:/John_specimen01.BAM
File Size in MB	Size of the File in MB	Numeric
File URI	URI of the file	File://trc/abc.maf
Alternate Filepath	The FTP path of the file
File Type, Version	Type of file and Version	Binary Alignment Map, 1.0
Alignment Version (DNA Reference Version)	Represents Assembly Version (DNA reference version against which this data was loaded)	GrCH37
Last Updated	When record was last updated	19-Mar-2012
Derived Child Files: File - Specimen Id, Vendor Id	Information about Derived Results files that have their lineage based on the particular Low Level file.	C:/John_specimen01.vcf - HG00096_1,HarvardLab1