1/12

Contents

List of Figures

List of Tables

Title and Copyright Information

Preface

• Audience
• Documentation Accessibility
• Finding Information and Patches on My Oracle Support
• Finding Documentation on Oracle Technology Network
• Related Documents
• Conventions

1 Introduction

• 1.1 Overview
• 1.2 Disclaimer
• 1.3 What Can I Do Using Oracle Healthcare Precision Medicine
• 1.4 User Roles
• 1.5 Known Issues

2 Home Page

• 2.1 Molecular Pathologist Home Page
  • 2.1.1 Tabs
    • 2.1.1.1 Genomic Report
    • 2.1.1.2 Patient Viewer
    • 2.1.1.3 Gene Sets
  • 2.1.2 New Orders
  • 2.1.3 My Draft Reports
  • 2.1.4 Published Reports
  • 2.1.5 Searching
• 2.2 Clinician Home Page
  • 2.2.1 Tabs
    • 2.2.1.1 Genetic Testing
    • 2.2.1.2 Patient Viewer
  • 2.2.2 Orders
  • 2.2.3 Searching

3 Filtering Variants and Starting Reports

• 3.1 Patient Overview
• 3.2 Selecting Data Files
• 3.3 Associating Diagnoses with Reports
• 3.4 Filtering Variants
  • 3.4.1 Filtering Criteria
    • 3.4.1.1 Clearing Filter Criteria
  • 3.4.2 Tabular View of Variants
  • 3.4.3 Filtering Variants Based on Custom Knowledge Bases

4 Reporting Workflow

• 4.1 Naming a Report
  • 4.1.1 Overwriting a Draft Report
• 4.2 Viewing a Report
• 4.3 Editing a Report
• 4.4 Customizing a Report
• 4.5 Deleting a Report
• 4.6 Previewing a Report
• 4.7 Requesting Interpretation
• 4.8 Publishing a Report
• 4.9 Summary and Recommendations

5 Annotation

• 5.1 Annotating Variants
• 5.2 Detailed Variant View
• 5.3 Annotation Pane

6 Patient Viewer

• 6.1 Introduction
• 6.2 Viewing Patient Details
• 6.3 Reports Available in the Patient Viewer
  • 6.3.1 Clinical Data
  • 6.3.2 Genomic Data

7 Gene Sets

• 7.1 Introduction
• 7.2 Gene Sets List
• 7.3 Adding or Editing Gene Sets
• 7.4 Managing Gene Sets
  • 7.4.1 Exporting a Gene Set
  • 7.4.2 Printing Gene Set Data
  • 7.4.3 Deleting a Gene Set