Table of Contents
Get Started
- Quick Start
- Send Requests
- Status Codes
- Using cURL
- Administration
- Error Messages
- Use Cases
- Identify a Subject Cohort and Extract Clinical Data
- Retrieve Variant Data in VCF Format and Specimen Metadata for a Patient Cohort
- Retrieve Annotations for a Chromosome Region of Interest
- Annotate Important Mutations with Gene and Function Information
- Extract Clinical Information Using Saved Cohort List and Save Cohort List for Specific Patient Group
- Criteria Classes
- CNVGeneDetails
- AnatomicalSiteCriteria
- ComparisonOperator
- CopyNumberVariationCriteria
- ConsentCriteria
- Criteria
- DateRangeFilter
- DemographicsCriteria
- DiagnosisCriteria
- EncounterCriteria
- GenomicCriteria
- History Criteria
- MedicationCriteria
- MetadataFilters
- MicroarrayExpressionCriteria
- MicroarrayExpressionGeneDetails
- NumberRangeFilter
- ObservationCriteria
- OmicsSequencingConditionsDS
- OracleDBQueryDS
- ProcedureCriteria
- RelativeTimeEventsBaseline
- RelativeTimeEventsComparator
- RelativeTimeEventsComparison
- RelativeTimeEventsCriteria
- RNASeqExpressionCriteria
- RNASeqGeneDetails
- SequenceVariantsCriteria
- SequenceVariantsGeneDetails
- SpecimenCriteria
- StudyCriteria
- VariantTypeAndImpact
Tasks
- Administration
- Cohort Selection
- Clinical Specimen
- Delete Patient Clinical Specimen API Query by Query Identifier
- Delete Subject Clinical Specimen API Query by Query Identifier
- Retrieve Clinical Specimen Query Results for a Query Identifier
- Retrieve Count of Patient Specimens for a Query Name/Criteria
- Retrieve Count of Subject Specimens for a Query Name/Criteria
- Retrieve Patient Clinical Specimen Queries Status
- Retrieve Patient Clinical Specimen Query Status
- Retrieve Patient Clinical Specimen Using Query Criteria
- Retrieve Subject Clinical Specimen Queries Status
- Retrieve Subject Clinical Specimen Query Status
- Retrieve Subject Clinical Specimen Using Query Criteria
- Patient
- Subject
- Clinical Specimen
- Demographics
- Genomic Export (VCF)
- Create Export Definition
- Create Export Job for an Export Definition
- Delete Export Definition
- Retrieve Export Definition for an Export Identifier
- Retrieve Export Definitions for Export Identifiers
- Retrieve Exported Data for a Job
- Retrieve Job Information for an Export Identifier and Job Identifier
- Retrieve Job Status for an Export Identifier and Job Identifier
- Retrieve Jobs
- Retrieve Jobs for an Export Identifier
- Genomic Reference
- Assembly
- Retrieve Genome Assembly Reference Versions for an Assembly Name
- Retrieve Genome Assembly Reference Versions for Assembly Names
- Retrieve Genomic Assemblies
- Retrieve Genomic Assembly Details for an Assembly Identifier
- Retrieve Genomic Assembly Details for an Assembly Name
- Retrieve Genomic Assembly Details for Assembly Identifiers
- Retrieve Genomic Assembly Details for Assembly Names
- Retrieve Genomic Assembly Reference Versions for an Assembly Identifier
- Retrieve Genomic Assembly Reference Versions for Assembly Identifiers
- Gene
- Retrieve Cancers for a Gene Identifier
- Retrieve CDS Components for a Gene Identifier
- Retrieve CDS Components for a Gene Identifier and Structure Identifier
- Retrieve Diseases for a Gene Identifier
- Retrieve Drugs for a Gene Identifier
- Retrieve Exon Components for a Gene Identifier
- Retrieve Exon Components for a Gene Identifier and Structure Identifier
- Retrieve Gene Components for a Gene Identifier
- Retrieve Gene for a Gene Identifier
- Retrieve Gene References for a Gene Identifier
- Retrieve Genes for a Gene Name
- Retrieve Genes for a Geneset Identifier
- Retrieve Genes for a HUGO Name
- Retrieve Genes for a Pathway Identifier
- Retrieve Genes for an Assembly Identifier
- Retrieve Genes for Chromosome
- Retrieve Genes for Gene Names
- Retrieve Genes for Geneset Identifiers
- Retrieve Genes for HUGO Names
- Retrieve Genes for Pathway Identifiers
- Retrieve Genomic Positions for a Gene Identifier
- Retrieve Genomic Positions for Gene Identifiers
- Retrieve Intron Components for a Gene Identifier
- Retrieve Intron Components for a Gene Identifier and Structure Identifier
- Retrieve misc_feature Components for a Gene Identifier
- Retrieve misc_feature Components for a Gene Identifier and Structure Identifier
- Retrieve misc_RNA Components for a Gene Identifier
- Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier
- Retrieve mRNA Components for a Gene Identifier
- Retrieve mRNA Components for a Gene Identifier and Structure Identifier
- Retrieve Pathways for a Gene Identifier
- Retrieve Proteins for a Gene Identifier
- Retrieve STS Components for a Gene Identifier
- Retrieve STS Components for a Gene Identifier and Structure Identifier
- Retrieve Transcripts for a Gene Identifier
- GeneSet
- Pathway
- Variant
- Retrieve Diseases for a Variant Identifier
- Retrieve Variant Annotations for a Variant Identifier
- Retrieve Variant Cancers for a Variant Identifier
- Retrieve Variant Effects for a Variant Identifier
- Retrieve Variant Predictions for a Variant Identifier
- Retrieve Variant References for a Variant Identifier
- Retrieve Variants for Chromosome
- Retrieve Variants for Chromosome and Allele
- Retrieve Variants for Gene Identifiers and Gene Components
- Retrieve Variants for Prediction and Chromosome
- Retrieve Variants for Prediction and Gene Identifiers
- Retrieve Variants for Reference Identifiers and Database with GET Request
- Retrieve Variants for Reference Identifiers and Database with POST Request
- Retrieve Variants for Variant Effect and Chromosome
- Retrieve Variants for Variant Effect and Gene Identifiers
- Assembly
- Manage Cohort
- Phenotype
- Administered Medications
- Conditions (Diagnosis)
- Retrieve Clinical Specimens for a Condition Patient Identifier
- Retrieve Condition for a Condition Identifier
- Retrieve Conditions for a Patient Identifier
- Retrieve Conditions for a Subject Identifier
- Retrieve Conditions for Patient Identifiers
- Retrieve Conditions for Subject Identifiers
- Retrieve Medications for a Condition Patient Identifier
- Retrieve Observations for a Condition Patient Identifier
- Retrieve Procedures for a Condition Patient Identifier
- Consent
- Encounter
- Ethnicity
- History
- Observation
- Procedure
- Race
- Specimen
- Clinical
- Retrieve Clinical Specimen Alias for a Specimen Identifier
- Retrieve Clinical Specimen Alias for Specimen Identifiers
- Retrieve Clinical Specimen for a Specimen Identifier
- Retrieve Clinical Specimen for Specimen Identifiers
- Retrieve Clinical Specimen Metadata for a Specimen Identifier
- Retrieve Clinical Specimen Metadata for Specimen Identifiers
- Retrieve Clinical Specimens having Omics Data for Specimen Identifier
- Retrieve Clinical Specimens having Omics Data for Specimen Identifiers
- Retrieve Diagnosis for a Clinical Specimen Identifier
- Genomics
- Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number
- Retrieve Genomic Specimen details for a Clinical Specimen Identifier
- Retrieve Genomic Specimen details for Clinical Specimen Identifiers
- Retrieve Genomic Specimen File Metadata for Specimen Identifier
- Retrieve Genomic Specimen Metadata for Specimen Identifier
- Retrieve Genomic Specimens for a Specimen Identifier
- Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers
- Clinical
- Studies