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Oracle® Health Sciences Translational Research Center User's Guide
Release 3.1.0.3
E66623-05
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2/15
List of Figures
1-1 Data Flow in TRC
2-1 Setting Context
2-2 Landing Page
2-3 Manage User Groups
3-1 My Workspace Screen
3-2 Manage Queries
3-3 Manage Cohort Lists
3-4 Create New or Edit Gene Set
3-5 Manage Gene Set
3-6 Select Gene Set
3-7 Create and Schedule Job
3-8 Job Lists
3-9 Job Details
3-10 Job Inputs
3-11 Job Outputs
4-1 Inclusion and Exclusions
4-2 Demographics
4-3 Query Statement
4-4 Diagnosis
4-5 Patient Information Demographics options
4-6 Consent
4-7 Diagnosis
4-8 Clinical Encounter
4-9 Procedure
4-10 Medication
4-11 Classic Search
4-12 Hierarchy Drill-in Search
4-13 Matching Codes from Hierarchy Drill-in Search
4-14 Patient History
4-15 Test or Observation
4-16 Specimen
4-17 Study Screen
4-18 Relative Time Events
4-19 Microarray Expression
4-20 Mandatory Filters
4-21 Optional Filters
4-22 Copy Number Variation - Numeric Based
4-23 Copy Number Variation - Categorized Based
4-24 RNA-seq Expression
4-25 Metadata Filters
4-26 Select Metadata Attributes
4-27 Patient Count
4-28 Criteria
4-29 Icons
4-30 Patient Count
4-31 Load Query
4-32 Save Query
5-1 Show Patients or Subjects
5-2 Cohort List
5-3 Cohort List with Reference Range Values for Numeric Results of Observation
5-4 Selecting Patients or Subjects
5-5 Patient or Subject Pool
5-6 Selecting Data
5-7 Timelines
5-8 View Same Events
5-9 Align Data by Subject Event
5-10 Include Criteria Used in Query
5-11 Patient Node
5-12 Select Demographic
5-13 Demographics Report
5-14 Patient ID Source
5-15 Clinical Report
5-16 SNA, Indel, CNV Gene-Level Filter Panel
5-17 SNA, Indel, CNV Variant vs Sample Filter Panel
5-18 Genomic Data Presence
5-19 Data Presence - Table Display
5-20 Distribution of Genomic Data
5-21 Select Source of Patient or Subject Identifiers
5-22 Show the Sequence Variants
5-23 Popup
5-24 Select Source of Patient or Subject Identifiers
5-25 Show the Copy Number Variations
5-26 Mutated Gene vs Sample Matrix Report
5-27 Variant vs Sample Report
5-28 Select Source of Patient or Subject Identifiers
5-29 Show the Structural Variations
5-30 Select Source of Patient or Subject Identifiers
5-31 Show the Structural Variations
5-32 Genomic Data Export
5-33 Selecting Results to Export
5-34 Selecting Location
5-35 File Type to Export options
5-36 Export Options - Schedule Mode
6-1 View Record
6-2 Hide and Display Options
6-3 All Records and Cohort Options
6-4 Variants Found
6-5 Selection Criteria
6-6 Specimen for Result Types
6-7 Circular Genomic Plot
7-1 Dashboard Page
8-1 Gene Search
8-2 Variant Search