REST API for Oracle Healthcare Translational Research

All REST Endpoints

Administration

Administration APIs

Reload Configuration Cache: Method: delete

Path: /config
Update Configuration Value: Method: put

Path: /config

Cohort Selection/Clinical Specimen

Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete

Path: /patientapi/clinicalspecimens/queries/{id}
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/queries/{id}/data
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries/count
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries/count
Retrieve Patient Clinical Specimen Queries Status: Method: get

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Query Status: Method: get

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Queries Status: Method: get

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Query Status: Method: get

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries

Cohort Selection/Patient

Delete Patient API Query: Method: delete

Path: /patientapi/patients/queries/{id}
Invoke Patient Query: Method: post

Path: /patientapi/patients/queries
Retrieve Patient Queries Status: Method: get

Path: /patientapi/patients/queries
Retrieve Patient Query Results for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}/data
Retrieve Patient Query Status for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}
Retrieve Patients Count: Method: post

Path: /patientapi/patients/queries/count

Cohort Selection/Subject

Delete Subject API Query: Method: delete

Path: /subjectapi/subjects/queries/{id}
Invoke Subject Query: Method: post

Path: /subjectapi/subjects/queries
Retrieve Subject Queries Status: Method: get

Path: /subjectapi/subjects/queries
Retrieve Subject Query Results for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}/data
Retrieve Subject Query Status for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}
Retrieve Subjects Count: Method: post

Path: /subjectapi/subjects/queries/count

Demographics/Patient

Demographics Patient APIs

Retrieve Demographics for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}
Retrieve Demographics for Cohort List Name or Patient Identifiers: Method: get

Path: /patientapi/patients
Retrieve Subjects for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/subjects

Demographics/Subject

Demographics Subject APIs

Retrieve Demographics for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}
Retrieve Demographics for Cohort List Name or Subject Identifiers: Method: get

Path: /subjectapi/subjects
Retrieve Patient for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/patients

Genomic Export (VCF)

Create Export Definition: Method: post

Path: /exports
Create Export Job for an Export Definition: Method: post

Path: /exports/{exportId}/jobs
Delete Export Definition: Method: delete

Path: /exports/{id}
Retrieve Export Definition for an Export Identifier: Method: get

Path: /exports/{id}
Retrieve Export Definitions for Export Identifiers: Method: get

Path: /exports
Retrieve Exported Data for a Job: Method: get

Path: /exports/{exportId}/jobs/{jobId}/data
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}/info
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}
Retrieve Jobs: Method: get

Path: /jobs
Retrieve Jobs for an Export Identifier: Method: get

Path: /exports/{exportId}/jobs

Genomic Reference/Assembly

Genomic Reference Assembly APIs

Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get

Path: /genomeAssemblyRefVersions/byName/{name}
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get

Path: /genomeAssemblyRefVersions/byName
Retrieve Genomic Assemblies: Method: get

Path: /genomeAssemblies
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get

Path: /genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Details for an Assembly Name: Method: get

Path: /genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get

Path: /genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get

Path: /genomeAssemblyDetails/byName
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get

Path: /genomeAssemblyRefVersions/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get

Path: /genomeAssemblyRefVersions

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts

Genomic Reference/GeneSet

Genomic Reference Geneset APIs

Create Geneset: Method: post

Path: /geneSets/create
Delete Geneset by Geneset Identifier: Method: delete

Path: /geneSets/delete/{id}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /geneSets/{id}
Retrieve Genesets: Method: get

Path: /geneSets

Genomic Reference/Pathway

Genomic Reference Pathway APIs

Retrieve HUGO Names for a Pathway Identifier: Method: get

Path: /pathways/{id}
Retrieve Pathways: Method: get

Path: /pathways

Genomic Reference/Variant

Retrieve Diseases for a Variant Identifier: Method: get

Path: /variants/{id}/diseases
Retrieve Variant Annotations for a Variant Identifier: Method: get

Path: /variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get

Path: /variants/{id}/cancer
Retrieve Variant Effects for a Variant Identifier: Method: get

Path: /variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get

Path: /variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get

Path: /variants/{id}/variantXRef
Retrieve Variants for Chromosome: Method: get

Path: /variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get

Path: /variants/byChromosome/byAllele
Retrieve Variants for Gene Identifiers and Gene Components: Method: get

Path: /variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get

Path: /variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get

Path: /variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get

Path: /variants/byReferenceId
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post

Path: /variants/byReferenceId
Retrieve Variants for Variant Effect and Chromosome: Method: get

Path: /variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get

Path: /variants/byEffect/byGenewid

Manage Cohort

Create Cohort List: Method: post

Path: /cohortlists/create
Delete Cohort List: Method: delete

Path: /cohortlists/delete/{id}
Retrieve Cohort List Members for a Cohort List Identifier: Method: get

Path: /cohortlists/{id}
Retrieve Saved Cohort Lists: Method: get

Path: /cohortlists
Retrieve Saved Queries: Method: get

Path: /savedqueries

Phenotype/Administered Medications

Phenotype Medication APIs

Retrieve Medications for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/administeredmedications
Retrieve Medications for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/administeredmedications
Retrieve Medications for Patient Identifiers: Method: get

Path: /patientapi/administeredmedications
Retrieve Medications for Subject Identifiers: Method: get

Path: /subjectapi/administeredmedications

Phenotype/Conditions (Diagnosis)

Phenotype Condition APIs

Retrieve Conditions for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/conditions
Retrieve Conditions for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/conditions
Retrieve Conditions for Patient Identifiers: Method: get

Path: /patientapi/conditions
Retrieve Conditions for Subject Identifiers: Method: get

Path: /subjectapi/conditions

Phenotype/Consent

Phenotype Consent APIs

Retrieve Consent for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/consent
Retrieve Consent for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/consent
Retrieve Consent for Patient Identifiers: Method: get

Path: /patientapi/consents
Retrieve Consent for Subject Identifiers: Method: get

Path: /subjectapi/consents

Phenotype/Encounter

Phenotype Encounter APIs

Retrieve Clinical Encounters for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/encounters
Retrieve Clinical Encounters for Patient Identifiers: Method: get

Path: /patientapi/encounters

Phenotype/Ethnicity

Phenotype Ethnicity APIs

Retrieve Ethnicity for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/ethnicity
Retrieve Ethnicity for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/ethnicity

Phenotype/History

Phenotype History APIs

Retrieve History for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/history
Retrieve History for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/history
Retrieve History for Patient Identifiers: Method: get

Path: /patientapi/patients/history
Retrieve History for Subject Identifiers: Method: get

Path: /subjectapi/subjects/history

Phenotype/Observation

Phenotype Observation APIs

Retrieve Observations for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/observations
Retrieve Observations for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/observations
Retrieve Observations for Patient Identifiers: Method: get

Path: /patientapi/observations
Retrieve Observations for Subject Identifiers: Method: get

Path: /subjectapi/observations

Phenotype/Procedure

Phenotype Procedure APIs

Retrieve Procedures for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/procedures
Retrieve Procedures for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/procedures
Retrieve Procedures for Patient Identifiers: Method: get

Path: /patientapi/procedures
Retrieve Procedures for Subject Identifiers: Method: get

Path: /subjectapi/procedures

Phenotype/Race

Phenotype Race APIs

Retrieve Race for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/race
Retrieve Race for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/race

Specimen/Clinical

Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/aliases
Retrieve Clinical Specimen for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/metadata
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/hasOmicsData

Specimen/Genomics

Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get

Path: /genomicspecimens/genomicFiles
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/genomicspecimens
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/metadata
Retrieve Genomic Specimens for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/genomicspecimens

Studies

Retrieve Studies for a Study Identifier: Method: get

Path: /studies/{id}
Retrieve Studies for Study Identifiers: Method: get

Path: /studies
Retrieve Studies for Study Identifiers and Names: Method: get

Path: /studies/search
Retrieve Study Specimens for a Study Identifier: Method: get

Path: /studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get

Path: /studies/{id}/subjects

All Endpoints

Create Cohort List: Method: post

Path: /cohortlists/create
Create Export Definition: Method: post

Path: /exports
Create Export Job for an Export Definition: Method: post

Path: /exports/{exportId}/jobs
Create Geneset: Method: post

Path: /geneSets/create
Delete Cohort List: Method: delete

Path: /cohortlists/delete/{id}
Delete Export Definition: Method: delete

Path: /exports/{id}
Delete Geneset by Geneset Identifier: Method: delete

Path: /geneSets/delete/{id}
Delete Patient API Query: Method: delete

Path: /patientapi/patients/queries/{id}
Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete

Path: /patientapi/clinicalspecimens/queries/{id}
Delete Subject API Query: Method: delete

Path: /subjectapi/subjects/queries/{id}
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete

Path: /subjectapi/clinicalspecimens/queries/{id}
Invoke Patient Query: Method: post

Path: /patientapi/patients/queries
Invoke Subject Query: Method: post

Path: /subjectapi/subjects/queries
Reload Configuration Cache: Method: delete

Path: /config
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve Clinical Encounters for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/encounters
Retrieve Clinical Encounters for Patient Identifiers: Method: get

Path: /patientapi/encounters
Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/aliases
Retrieve Clinical Specimen for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/metadata
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/queries/{id}/data
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/hasOmicsData
Retrieve Cohort List Members for a Cohort List Identifier: Method: get

Path: /cohortlists/{id}
Retrieve Conditions for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/conditions
Retrieve Conditions for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/conditions
Retrieve Conditions for Patient Identifiers: Method: get

Path: /patientapi/conditions
Retrieve Conditions for Subject Identifiers: Method: get

Path: /subjectapi/conditions
Retrieve Consent for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/consent
Retrieve Consent for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/consent
Retrieve Consent for Patient Identifiers: Method: get

Path: /patientapi/consents
Retrieve Consent for Subject Identifiers: Method: get

Path: /subjectapi/consents
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries/count
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries/count
Retrieve Demographics for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}
Retrieve Demographics for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}
Retrieve Demographics for Cohort List Name or Patient Identifiers: Method: get

Path: /patientapi/patients
Retrieve Demographics for Cohort List Name or Subject Identifiers: Method: get

Path: /subjectapi/subjects
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Diseases for a Variant Identifier: Method: get

Path: /variants/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Ethnicity for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/ethnicity
Retrieve Ethnicity for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/ethnicity
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Export Definition for an Export Identifier: Method: get

Path: /exports/{id}
Retrieve Export Definitions for Export Identifiers: Method: get

Path: /exports
Retrieve Exported Data for a Job: Method: get

Path: /exports/{exportId}/jobs/{jobId}/data
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /geneSets/{id}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genesets: Method: get

Path: /geneSets
Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get

Path: /genomeAssemblyRefVersions/byName/{name}
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get

Path: /genomeAssemblyRefVersions/byName
Retrieve Genomic Assemblies: Method: get

Path: /genomeAssemblies
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get

Path: /genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Details for an Assembly Name: Method: get

Path: /genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get

Path: /genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get

Path: /genomeAssemblyDetails/byName
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get

Path: /genomeAssemblyRefVersions/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get

Path: /genomeAssemblyRefVersions
Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get

Path: /genomicspecimens/genomicFiles
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/genomicspecimens
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/metadata
Retrieve Genomic Specimens for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/genomicspecimens
Retrieve History for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/history
Retrieve History for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/history
Retrieve History for Patient Identifiers: Method: get

Path: /patientapi/patients/history
Retrieve History for Subject Identifiers: Method: get

Path: /subjectapi/subjects/history
Retrieve HUGO Names for a Pathway Identifier: Method: get

Path: /pathways/{id}
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}/info
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}
Retrieve Jobs: Method: get

Path: /jobs
Retrieve Jobs for an Export Identifier: Method: get

Path: /exports/{exportId}/jobs
Retrieve Medications for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/administeredmedications
Retrieve Medications for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/administeredmedications
Retrieve Medications for Patient Identifiers: Method: get

Path: /patientapi/administeredmedications
Retrieve Medications for Subject Identifiers: Method: get

Path: /subjectapi/administeredmedications
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve Observations for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/observations
Retrieve Observations for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/observations
Retrieve Observations for Patient Identifiers: Method: get

Path: /patientapi/observations
Retrieve Observations for Subject Identifiers: Method: get

Path: /subjectapi/observations
Retrieve Pathways: Method: get

Path: /pathways
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Patient Clinical Specimen Queries Status: Method: get

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Query Status: Method: get

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/patients
Retrieve Patient Queries Status: Method: get

Path: /patientapi/patients/queries
Retrieve Patient Query Results for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}/data
Retrieve Patient Query Status for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}
Retrieve Patients Count: Method: post

Path: /patientapi/patients/queries/count
Retrieve Procedures for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/procedures
Retrieve Procedures for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/procedures
Retrieve Procedures for Patient Identifiers: Method: get

Path: /patientapi/procedures
Retrieve Procedures for Subject Identifiers: Method: get

Path: /subjectapi/procedures
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Race for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/race
Retrieve Race for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/race
Retrieve Saved Cohort Lists: Method: get

Path: /cohortlists
Retrieve Saved Queries: Method: get

Path: /savedqueries
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Studies for a Study Identifier: Method: get

Path: /studies/{id}
Retrieve Studies for Study Identifiers: Method: get

Path: /studies
Retrieve Studies for Study Identifiers and Names: Method: get

Path: /studies/search
Retrieve Study Specimens for a Study Identifier: Method: get

Path: /studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get

Path: /studies/{id}/subjects
Retrieve Subject Clinical Specimen Queries Status: Method: get

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Query Status: Method: get

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Queries Status: Method: get

Path: /subjectapi/subjects/queries
Retrieve Subject Query Results for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}/data
Retrieve Subject Query Status for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}
Retrieve Subjects Count: Method: post

Path: /subjectapi/subjects/queries/count
Retrieve Subjects for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/subjects
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve Variant Annotations for a Variant Identifier: Method: get

Path: /variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get

Path: /variants/{id}/cancer
Retrieve Variant Effects for a Variant Identifier: Method: get

Path: /variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get

Path: /variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get

Path: /variants/{id}/variantXRef
Retrieve Variants for Chromosome: Method: get

Path: /variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get

Path: /variants/byChromosome/byAllele
Retrieve Variants for Gene Identifiers and Gene Components: Method: get

Path: /variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get

Path: /variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get

Path: /variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get

Path: /variants/byReferenceId
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post

Path: /variants/byReferenceId
Retrieve Variants for Variant Effect and Chromosome: Method: get

Path: /variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get

Path: /variants/byEffect/byGenewid
Update Configuration Value: Method: put

Path: /config

Administration

Administration APIs

Reload Configuration Cache: Method: delete

Path: /config
Update Configuration Value: Method: put

Path: /config

Cohort Selection/Clinical Specimen

Retrieve Patient Clinical Specimen Queries Status: Method: get

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries/count
Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Patient Clinical Specimen Query Status: Method: get

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Queries Status: Method: get

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries/count
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Query Status: Method: get

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/queries/{id}/data

Cohort Selection/Patient

Retrieve Patient Queries Status: Method: get

Path: /patientapi/patients/queries
Invoke Patient Query: Method: post

Path: /patientapi/patients/queries
Retrieve Patients Count: Method: post

Path: /patientapi/patients/queries/count
Delete Patient API Query: Method: delete

Path: /patientapi/patients/queries/{id}
Retrieve Patient Query Status for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}
Retrieve Patient Query Results for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}/data

Cohort Selection/Subject

Retrieve Subject Queries Status: Method: get

Path: /subjectapi/subjects/queries
Invoke Subject Query: Method: post

Path: /subjectapi/subjects/queries
Retrieve Subjects Count: Method: post

Path: /subjectapi/subjects/queries/count
Delete Subject API Query: Method: delete

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Query Status for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Query Results for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}/data

Demographics/Patient

Demographics Patient APIs

Retrieve Demographics for Cohort List Name or Patient Identifiers: Method: get

Path: /patientapi/patients
Retrieve Demographics for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}
Retrieve Subjects for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/subjects

Demographics/Subject

Demographics Subject APIs

Retrieve Demographics for Cohort List Name or Subject Identifiers: Method: get

Path: /subjectapi/subjects
Retrieve Demographics for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}
Retrieve Patient for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/patients

Genomic Export (VCF)

Retrieve Export Definitions for Export Identifiers: Method: get

Path: /exports
Create Export Definition: Method: post

Path: /exports
Retrieve Jobs for an Export Identifier: Method: get

Path: /exports/{exportId}/jobs
Create Export Job for an Export Definition: Method: post

Path: /exports/{exportId}/jobs
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}
Retrieve Exported Data for a Job: Method: get

Path: /exports/{exportId}/jobs/{jobId}/data
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}/info
Delete Export Definition: Method: delete

Path: /exports/{id}
Retrieve Export Definition for an Export Identifier: Method: get

Path: /exports/{id}
Retrieve Jobs: Method: get

Path: /jobs

Genomic Reference/Assembly

Genomic Reference Assembly APIs

Retrieve Genomic Assemblies: Method: get

Path: /genomeAssemblies
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get

Path: /genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get

Path: /genomeAssemblyDetails/byName
Retrieve Genomic Assembly Details for an Assembly Name: Method: get

Path: /genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get

Path: /genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get

Path: /genomeAssemblyRefVersions
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get

Path: /genomeAssemblyRefVersions/byName
Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get

Path: /genomeAssemblyRefVersions/byName/{name}
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get

Path: /genomeAssemblyRefVersions/{id}

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature

Genomic Reference/GeneSet

Genomic Reference Geneset APIs

Retrieve Genesets: Method: get

Path: /geneSets
Create Geneset: Method: post

Path: /geneSets/create
Delete Geneset by Geneset Identifier: Method: delete

Path: /geneSets/delete/{id}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /geneSets/{id}

Genomic Reference/Pathway

Genomic Reference Pathway APIs

Retrieve Pathways: Method: get

Path: /pathways
Retrieve HUGO Names for a Pathway Identifier: Method: get

Path: /pathways/{id}

Genomic Reference/Variant

Retrieve Variants for Chromosome: Method: get

Path: /variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get

Path: /variants/byChromosome/byAllele
Retrieve Variants for Variant Effect and Chromosome: Method: get

Path: /variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get

Path: /variants/byEffect/byGenewid
Retrieve Variants for Gene Identifiers and Gene Components: Method: get

Path: /variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get

Path: /variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get

Path: /variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get

Path: /variants/byReferenceId
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post

Path: /variants/byReferenceId
Retrieve Variant Annotations for a Variant Identifier: Method: get

Path: /variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get

Path: /variants/{id}/cancer
Retrieve Diseases for a Variant Identifier: Method: get

Path: /variants/{id}/diseases
Retrieve Variant Effects for a Variant Identifier: Method: get

Path: /variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get

Path: /variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get

Path: /variants/{id}/variantXRef

Manage Cohort

Retrieve Saved Cohort Lists: Method: get

Path: /cohortlists
Create Cohort List: Method: post

Path: /cohortlists/create
Delete Cohort List: Method: delete

Path: /cohortlists/delete/{id}
Retrieve Cohort List Members for a Cohort List Identifier: Method: get

Path: /cohortlists/{id}
Retrieve Saved Queries: Method: get

Path: /savedqueries

Phenotype/Administered Medications

Phenotype Medication APIs

Retrieve Medications for Patient Identifiers: Method: get

Path: /patientapi/administeredmedications
Retrieve Medications for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/administeredmedications
Retrieve Medications for Subject Identifiers: Method: get

Path: /subjectapi/administeredmedications
Retrieve Medications for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/administeredmedications

Phenotype/Conditions (Diagnosis)

Phenotype Condition APIs

Retrieve Conditions for Patient Identifiers: Method: get

Path: /patientapi/conditions
Retrieve Conditions for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/conditions
Retrieve Conditions for Subject Identifiers: Method: get

Path: /subjectapi/conditions
Retrieve Conditions for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/conditions

Phenotype/Consent

Phenotype Consent APIs

Retrieve Consent for Patient Identifiers: Method: get

Path: /patientapi/consents
Retrieve Consent for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/consent
Retrieve Consent for Subject Identifiers: Method: get

Path: /subjectapi/consents
Retrieve Consent for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/consent

Phenotype/Encounter

Phenotype Encounter APIs

Retrieve Clinical Encounters for Patient Identifiers: Method: get

Path: /patientapi/encounters
Retrieve Clinical Encounters for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/encounters

Phenotype/Ethnicity

Phenotype Ethnicity APIs

Retrieve Ethnicity for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/ethnicity
Retrieve Ethnicity for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/ethnicity

Phenotype/History

Phenotype History APIs

Retrieve History for Patient Identifiers: Method: get

Path: /patientapi/patients/history
Retrieve History for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/history
Retrieve History for Subject Identifiers: Method: get

Path: /subjectapi/subjects/history
Retrieve History for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/history

Phenotype/Observation

Phenotype Observation APIs

Retrieve Observations for Patient Identifiers: Method: get

Path: /patientapi/observations
Retrieve Observations for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/observations
Retrieve Observations for Subject Identifiers: Method: get

Path: /subjectapi/observations
Retrieve Observations for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/observations

Phenotype/Procedure

Phenotype Procedure APIs

Retrieve Procedures for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/procedures
Retrieve Procedures for Patient Identifiers: Method: get

Path: /patientapi/procedures
Retrieve Procedures for Subject Identifiers: Method: get

Path: /subjectapi/procedures
Retrieve Procedures for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/procedures

Phenotype/Race

Phenotype Race APIs

Retrieve Race for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/race
Retrieve Race for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/race

Specimen/Clinical

Retrieve Clinical Specimen for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/aliases
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/hasOmicsData
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimen for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/metadata

Specimen/Genomics

Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get

Path: /genomicspecimens/genomicFiles
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/genomicspecimens
Retrieve Genomic Specimens for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/genomicspecimens
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/metadata

Studies

Retrieve Studies for Study Identifiers: Method: get

Path: /studies
Retrieve Studies for Study Identifiers and Names: Method: get

Path: /studies/search
Retrieve Studies for a Study Identifier: Method: get

Path: /studies/{id}
Retrieve Study Specimens for a Study Identifier: Method: get

Path: /studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get

Path: /studies/{id}/subjects

All Endpoints

Retrieve Saved Cohort Lists: Method: get

Path: /cohortlists
Create Cohort List: Method: post

Path: /cohortlists/create
Delete Cohort List: Method: delete

Path: /cohortlists/delete/{id}
Retrieve Cohort List Members for a Cohort List Identifier: Method: get

Path: /cohortlists/{id}
Reload Configuration Cache: Method: delete

Path: /config
Update Configuration Value: Method: put

Path: /config
Retrieve Export Definitions for Export Identifiers: Method: get

Path: /exports
Create Export Definition: Method: post

Path: /exports
Retrieve Jobs for an Export Identifier: Method: get

Path: /exports/{exportId}/jobs
Create Export Job for an Export Definition: Method: post

Path: /exports/{exportId}/jobs
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}
Retrieve Exported Data for a Job: Method: get

Path: /exports/{exportId}/jobs/{jobId}/data
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}/info
Delete Export Definition: Method: delete

Path: /exports/{id}
Retrieve Export Definition for an Export Identifier: Method: get

Path: /exports/{id}
Retrieve Genesets: Method: get

Path: /geneSets
Create Geneset: Method: post

Path: /geneSets/create
Delete Geneset by Geneset Identifier: Method: delete

Path: /geneSets/delete/{id}
Retrieve Genes for a Geneset Identifier: Method: get

Path: /geneSets/{id}
Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature
Retrieve Genomic Assemblies: Method: get

Path: /genomeAssemblies
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get

Path: /genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get

Path: /genomeAssemblyDetails/byName
Retrieve Genomic Assembly Details for an Assembly Name: Method: get

Path: /genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get

Path: /genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get

Path: /genomeAssemblyRefVersions
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get

Path: /genomeAssemblyRefVersions/byName
Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get

Path: /genomeAssemblyRefVersions/byName/{name}
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get

Path: /genomeAssemblyRefVersions/{id}
Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get

Path: /genomicspecimens/genomicFiles
Retrieve Jobs: Method: get

Path: /jobs
Retrieve Pathways: Method: get

Path: /pathways
Retrieve HUGO Names for a Pathway Identifier: Method: get

Path: /pathways/{id}
Retrieve Medications for Patient Identifiers: Method: get

Path: /patientapi/administeredmedications
Retrieve Patient Clinical Specimen Queries Status: Method: get

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries/count
Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Patient Clinical Specimen Query Status: Method: get

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Conditions for Patient Identifiers: Method: get

Path: /patientapi/conditions
Retrieve Consent for Patient Identifiers: Method: get

Path: /patientapi/consents
Retrieve Clinical Encounters for Patient Identifiers: Method: get

Path: /patientapi/encounters
Retrieve Observations for Patient Identifiers: Method: get

Path: /patientapi/observations
Retrieve Demographics for Cohort List Name or Patient Identifiers: Method: get

Path: /patientapi/patients
Retrieve History for Patient Identifiers: Method: get

Path: /patientapi/patients/history
Retrieve Patient Queries Status: Method: get

Path: /patientapi/patients/queries
Invoke Patient Query: Method: post

Path: /patientapi/patients/queries
Retrieve Patients Count: Method: post

Path: /patientapi/patients/queries/count
Delete Patient API Query: Method: delete

Path: /patientapi/patients/queries/{id}
Retrieve Patient Query Status for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}
Retrieve Patient Query Results for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}/data
Retrieve Demographics for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}
Retrieve Medications for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/administeredmedications
Retrieve Conditions for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/conditions
Retrieve Consent for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/consent
Retrieve Clinical Encounters for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/encounters
Retrieve Ethnicity for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/ethnicity
Retrieve History for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/history
Retrieve Observations for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/observations
Retrieve Procedures for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/procedures
Retrieve Race for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/race
Retrieve Subjects for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/subjects
Retrieve Procedures for Patient Identifiers: Method: get

Path: /patientapi/procedures
Retrieve Saved Queries: Method: get

Path: /savedqueries
Retrieve Studies for Study Identifiers: Method: get

Path: /studies
Retrieve Studies for Study Identifiers and Names: Method: get

Path: /studies/search
Retrieve Studies for a Study Identifier: Method: get

Path: /studies/{id}
Retrieve Study Specimens for a Study Identifier: Method: get

Path: /studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get

Path: /studies/{id}/subjects
Retrieve Medications for Subject Identifiers: Method: get

Path: /subjectapi/administeredmedications
Retrieve Subject Clinical Specimen Queries Status: Method: get

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries/count
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Query Status: Method: get

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Conditions for Subject Identifiers: Method: get

Path: /subjectapi/conditions
Retrieve Consent for Subject Identifiers: Method: get

Path: /subjectapi/consents
Retrieve Observations for Subject Identifiers: Method: get

Path: /subjectapi/observations
Retrieve Procedures for Subject Identifiers: Method: get

Path: /subjectapi/procedures
Retrieve Demographics for Cohort List Name or Subject Identifiers: Method: get

Path: /subjectapi/subjects
Retrieve History for Subject Identifiers: Method: get

Path: /subjectapi/subjects/history
Retrieve Subject Queries Status: Method: get

Path: /subjectapi/subjects/queries
Invoke Subject Query: Method: post

Path: /subjectapi/subjects/queries
Retrieve Subjects Count: Method: post

Path: /subjectapi/subjects/queries/count
Delete Subject API Query: Method: delete

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Query Status for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Query Results for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}/data
Retrieve Demographics for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}
Retrieve Medications for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/administeredmedications
Retrieve Conditions for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/conditions
Retrieve Consent for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/consent
Retrieve Ethnicity for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/ethnicity
Retrieve History for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/history
Retrieve Observations for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/observations
Retrieve Patient for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/patients
Retrieve Procedures for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/procedures
Retrieve Race for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/race
Retrieve Variants for Chromosome: Method: get

Path: /variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get

Path: /variants/byChromosome/byAllele
Retrieve Variants for Variant Effect and Chromosome: Method: get

Path: /variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get

Path: /variants/byEffect/byGenewid
Retrieve Variants for Gene Identifiers and Gene Components: Method: get

Path: /variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get

Path: /variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get

Path: /variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get

Path: /variants/byReferenceId
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post

Path: /variants/byReferenceId
Retrieve Variant Annotations for a Variant Identifier: Method: get

Path: /variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get

Path: /variants/{id}/cancer
Retrieve Diseases for a Variant Identifier: Method: get

Path: /variants/{id}/diseases
Retrieve Variant Effects for a Variant Identifier: Method: get

Path: /variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get

Path: /variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get

Path: /variants/{id}/variantXRef
Retrieve Clinical Specimen for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/aliases
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/genomicspecimens
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/hasOmicsData
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/queries/{id}/data
Retrieve Clinical Specimen for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Genomic Specimens for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/metadata
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/genomicspecimens
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/metadata

Administration

Administration APIs

Reload Configuration Cache: Method: delete

Path: /config
Update Configuration Value: Method: put

Path: /config

Cohort Selection/Clinical Specimen

Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete

Path: /patientapi/clinicalspecimens/queries/{id}
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Patient Clinical Specimen Queries Status: Method: get

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Query Status: Method: get

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Queries Status: Method: get

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Query Status: Method: get

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/queries/{id}/data
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries/count
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries/count

Cohort Selection/Patient

Delete Patient API Query: Method: delete

Path: /patientapi/patients/queries/{id}
Retrieve Patient Queries Status: Method: get

Path: /patientapi/patients/queries
Retrieve Patient Query Status for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}
Retrieve Patient Query Results for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}/data
Invoke Patient Query: Method: post

Path: /patientapi/patients/queries
Retrieve Patients Count: Method: post

Path: /patientapi/patients/queries/count

Cohort Selection/Subject

Delete Subject API Query: Method: delete

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Queries Status: Method: get

Path: /subjectapi/subjects/queries
Retrieve Subject Query Status for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Query Results for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}/data
Invoke Subject Query: Method: post

Path: /subjectapi/subjects/queries
Retrieve Subjects Count: Method: post

Path: /subjectapi/subjects/queries/count

Demographics/Patient

Demographics Patient APIs

Retrieve Demographics for Cohort List Name or Patient Identifiers: Method: get

Path: /patientapi/patients
Retrieve Demographics for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}
Retrieve Subjects for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/subjects

Demographics/Subject

Demographics Subject APIs

Retrieve Demographics for Cohort List Name or Subject Identifiers: Method: get

Path: /subjectapi/subjects
Retrieve Demographics for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}
Retrieve Patient for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/patients

Genomic Export (VCF)

Delete Export Definition: Method: delete

Path: /exports/{id}
Retrieve Export Definitions for Export Identifiers: Method: get

Path: /exports
Retrieve Jobs for an Export Identifier: Method: get

Path: /exports/{exportId}/jobs
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}
Retrieve Exported Data for a Job: Method: get

Path: /exports/{exportId}/jobs/{jobId}/data
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}/info
Retrieve Export Definition for an Export Identifier: Method: get

Path: /exports/{id}
Retrieve Jobs: Method: get

Path: /jobs
Create Export Definition: Method: post

Path: /exports
Create Export Job for an Export Definition: Method: post

Path: /exports/{exportId}/jobs

Genomic Reference/Assembly

Genomic Reference Assembly APIs

Retrieve Genomic Assemblies: Method: get

Path: /genomeAssemblies
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get

Path: /genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get

Path: /genomeAssemblyDetails/byName
Retrieve Genomic Assembly Details for an Assembly Name: Method: get

Path: /genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get

Path: /genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get

Path: /genomeAssemblyRefVersions
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get

Path: /genomeAssemblyRefVersions/byName
Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get

Path: /genomeAssemblyRefVersions/byName/{name}
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get

Path: /genomeAssemblyRefVersions/{id}

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature

Genomic Reference/GeneSet

Genomic Reference Geneset APIs

Delete Geneset by Geneset Identifier: Method: delete

Path: /geneSets/delete/{id}
Retrieve Genesets: Method: get

Path: /geneSets
Retrieve Genes for a Geneset Identifier: Method: get

Path: /geneSets/{id}
Create Geneset: Method: post

Path: /geneSets/create

Genomic Reference/Pathway

Genomic Reference Pathway APIs

Retrieve Pathways: Method: get

Path: /pathways
Retrieve HUGO Names for a Pathway Identifier: Method: get

Path: /pathways/{id}

Genomic Reference/Variant

Retrieve Variants for Chromosome: Method: get

Path: /variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get

Path: /variants/byChromosome/byAllele
Retrieve Variants for Variant Effect and Chromosome: Method: get

Path: /variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get

Path: /variants/byEffect/byGenewid
Retrieve Variants for Gene Identifiers and Gene Components: Method: get

Path: /variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get

Path: /variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get

Path: /variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get

Path: /variants/byReferenceId
Retrieve Variant Annotations for a Variant Identifier: Method: get

Path: /variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get

Path: /variants/{id}/cancer
Retrieve Diseases for a Variant Identifier: Method: get

Path: /variants/{id}/diseases
Retrieve Variant Effects for a Variant Identifier: Method: get

Path: /variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get

Path: /variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get

Path: /variants/{id}/variantXRef
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post

Path: /variants/byReferenceId

Manage Cohort

Delete Cohort List: Method: delete

Path: /cohortlists/delete/{id}
Retrieve Saved Cohort Lists: Method: get

Path: /cohortlists
Retrieve Cohort List Members for a Cohort List Identifier: Method: get

Path: /cohortlists/{id}
Retrieve Saved Queries: Method: get

Path: /savedqueries
Create Cohort List: Method: post

Path: /cohortlists/create

Phenotype/Administered Medications

Phenotype Medication APIs

Retrieve Medications for Patient Identifiers: Method: get

Path: /patientapi/administeredmedications
Retrieve Medications for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/administeredmedications
Retrieve Medications for Subject Identifiers: Method: get

Path: /subjectapi/administeredmedications
Retrieve Medications for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/administeredmedications

Phenotype/Conditions (Diagnosis)

Phenotype Condition APIs

Retrieve Conditions for Patient Identifiers: Method: get

Path: /patientapi/conditions
Retrieve Conditions for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/conditions
Retrieve Conditions for Subject Identifiers: Method: get

Path: /subjectapi/conditions
Retrieve Conditions for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/conditions

Phenotype/Consent

Phenotype Consent APIs

Retrieve Consent for Patient Identifiers: Method: get

Path: /patientapi/consents
Retrieve Consent for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/consent
Retrieve Consent for Subject Identifiers: Method: get

Path: /subjectapi/consents
Retrieve Consent for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/consent

Phenotype/Encounter

Phenotype Encounter APIs

Retrieve Clinical Encounters for Patient Identifiers: Method: get

Path: /patientapi/encounters
Retrieve Clinical Encounters for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/encounters

Phenotype/Ethnicity

Phenotype Ethnicity APIs

Retrieve Ethnicity for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/ethnicity
Retrieve Ethnicity for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/ethnicity

Phenotype/History

Phenotype History APIs

Retrieve History for Patient Identifiers: Method: get

Path: /patientapi/patients/history
Retrieve History for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/history
Retrieve History for Subject Identifiers: Method: get

Path: /subjectapi/subjects/history
Retrieve History for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/history

Phenotype/Observation

Phenotype Observation APIs

Retrieve Observations for Patient Identifiers: Method: get

Path: /patientapi/observations
Retrieve Observations for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/observations
Retrieve Observations for Subject Identifiers: Method: get

Path: /subjectapi/observations
Retrieve Observations for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/observations

Phenotype/Procedure

Phenotype Procedure APIs

Retrieve Procedures for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/procedures
Retrieve Procedures for Patient Identifiers: Method: get

Path: /patientapi/procedures
Retrieve Procedures for Subject Identifiers: Method: get

Path: /subjectapi/procedures
Retrieve Procedures for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/procedures

Phenotype/Race

Phenotype Race APIs

Retrieve Race for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/race
Retrieve Race for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/race

Specimen/Clinical

Retrieve Clinical Specimen for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/aliases
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/hasOmicsData
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimen for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/metadata

Specimen/Genomics

Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get

Path: /genomicspecimens/genomicFiles
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/genomicspecimens
Retrieve Genomic Specimens for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/genomicspecimens
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/metadata

Studies

Retrieve Studies for Study Identifiers: Method: get

Path: /studies
Retrieve Studies for Study Identifiers and Names: Method: get

Path: /studies/search
Retrieve Studies for a Study Identifier: Method: get

Path: /studies/{id}
Retrieve Study Specimens for a Study Identifier: Method: get

Path: /studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get

Path: /studies/{id}/subjects

All Endpoints

Delete Cohort List: Method: delete

Path: /cohortlists/delete/{id}
Reload Configuration Cache: Method: delete

Path: /config
Delete Export Definition: Method: delete

Path: /exports/{id}
Delete Geneset by Geneset Identifier: Method: delete

Path: /geneSets/delete/{id}
Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete

Path: /patientapi/clinicalspecimens/queries/{id}
Delete Patient API Query: Method: delete

Path: /patientapi/patients/queries/{id}
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete

Path: /subjectapi/clinicalspecimens/queries/{id}
Delete Subject API Query: Method: delete

Path: /subjectapi/subjects/queries/{id}
Retrieve Saved Cohort Lists: Method: get

Path: /cohortlists
Retrieve Cohort List Members for a Cohort List Identifier: Method: get

Path: /cohortlists/{id}
Retrieve Export Definitions for Export Identifiers: Method: get

Path: /exports
Retrieve Jobs for an Export Identifier: Method: get

Path: /exports/{exportId}/jobs
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}
Retrieve Exported Data for a Job: Method: get

Path: /exports/{exportId}/jobs/{jobId}/data
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get

Path: /exports/{exportId}/jobs/{jobId}/info
Retrieve Export Definition for an Export Identifier: Method: get

Path: /exports/{id}
Retrieve Genesets: Method: get

Path: /geneSets
Retrieve Genes for a Geneset Identifier: Method: get

Path: /geneSets/{id}
Retrieve Genes for an Assembly Identifier: Method: get

Path: /genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get

Path: /genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get

Path: /genes/byGeneName
Retrieve Genes for a Gene Name: Method: get

Path: /genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for Geneset Identifiers: Method: get

Path: /genes/byGeneSet
Retrieve Genes for a Geneset Identifier: Method: get

Path: /genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for HUGO Names: Method: get

Path: /genes/byHugoName
Retrieve Genes for a HUGO Name: Method: get

Path: /genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for Pathway Identifiers: Method: get

Path: /genes/byPathway
Retrieve Genes for a Pathway Identifier: Method: get

Path: /genes/byPathway/{id}/{alignmentId}
Retrieve Genomic Positions for Gene Identifiers: Method: get

Path: /genes/genomicPositions
Retrieve Gene for a Gene Identifier: Method: get

Path: /genes/{id}
Retrieve Cancers for a Gene Identifier: Method: get

Path: /genes/{id}/cancer
Retrieve Gene Components for a Gene Identifier: Method: get

Path: /genes/{id}/components
Retrieve CDS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/CDS
Retrieve STS Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/STS
Retrieve Exon Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/exon
Retrieve Intron Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/intron
Retrieve mRNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier: Method: get

Path: /genes/{id}/components/misc_feature
Retrieve Diseases for a Gene Identifier: Method: get

Path: /genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get

Path: /genes/{id}/drugs
Retrieve Gene References for a Gene Identifier: Method: get

Path: /genes/{id}/geneXref
Retrieve Genomic Positions for a Gene Identifier: Method: get

Path: /genes/{id}/genomicPositions
Retrieve Pathways for a Gene Identifier: Method: get

Path: /genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get

Path: /genes/{id}/proteins
Retrieve Transcripts for a Gene Identifier: Method: get

Path: /genes/{id}/transcripts
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/CDS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/STS
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/exon
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/intron
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/mRNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_RNA
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get

Path: /genes/{id}/{structure}/components/misc_feature
Retrieve Genomic Assemblies: Method: get

Path: /genomeAssemblies
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get

Path: /genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get

Path: /genomeAssemblyDetails/byName
Retrieve Genomic Assembly Details for an Assembly Name: Method: get

Path: /genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get

Path: /genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get

Path: /genomeAssemblyRefVersions
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get

Path: /genomeAssemblyRefVersions/byName
Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get

Path: /genomeAssemblyRefVersions/byName/{name}
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get

Path: /genomeAssemblyRefVersions/{id}
Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get

Path: /genomicspecimens/genomicFiles
Retrieve Jobs: Method: get

Path: /jobs
Retrieve Pathways: Method: get

Path: /pathways
Retrieve HUGO Names for a Pathway Identifier: Method: get

Path: /pathways/{id}
Retrieve Medications for Patient Identifiers: Method: get

Path: /patientapi/administeredmedications
Retrieve Patient Clinical Specimen Queries Status: Method: get

Path: /patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Query Status: Method: get

Path: /patientapi/clinicalspecimens/queries/{id}
Retrieve Conditions for Patient Identifiers: Method: get

Path: /patientapi/conditions
Retrieve Consent for Patient Identifiers: Method: get

Path: /patientapi/consents
Retrieve Clinical Encounters for Patient Identifiers: Method: get

Path: /patientapi/encounters
Retrieve Observations for Patient Identifiers: Method: get

Path: /patientapi/observations
Retrieve Demographics for Cohort List Name or Patient Identifiers: Method: get

Path: /patientapi/patients
Retrieve History for Patient Identifiers: Method: get

Path: /patientapi/patients/history
Retrieve Patient Queries Status: Method: get

Path: /patientapi/patients/queries
Retrieve Patient Query Status for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}
Retrieve Patient Query Results for a Query Identifier: Method: get

Path: /patientapi/patients/queries/{id}/data
Retrieve Demographics for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}
Retrieve Medications for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/administeredmedications
Retrieve Conditions for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/conditions
Retrieve Consent for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/consent
Retrieve Clinical Encounters for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/encounters
Retrieve Ethnicity for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/ethnicity
Retrieve History for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/history
Retrieve Observations for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/observations
Retrieve Procedures for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/procedures
Retrieve Race for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/race
Retrieve Subjects for a Patient Identifier: Method: get

Path: /patientapi/patients/{id}/subjects
Retrieve Procedures for Patient Identifiers: Method: get

Path: /patientapi/procedures
Retrieve Saved Queries: Method: get

Path: /savedqueries
Retrieve Studies for Study Identifiers: Method: get

Path: /studies
Retrieve Studies for Study Identifiers and Names: Method: get

Path: /studies/search
Retrieve Studies for a Study Identifier: Method: get

Path: /studies/{id}
Retrieve Study Specimens for a Study Identifier: Method: get

Path: /studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get

Path: /studies/{id}/subjects
Retrieve Medications for Subject Identifiers: Method: get

Path: /subjectapi/administeredmedications
Retrieve Subject Clinical Specimen Queries Status: Method: get

Path: /subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Query Status: Method: get

Path: /subjectapi/clinicalspecimens/queries/{id}
Retrieve Conditions for Subject Identifiers: Method: get

Path: /subjectapi/conditions
Retrieve Consent for Subject Identifiers: Method: get

Path: /subjectapi/consents
Retrieve Observations for Subject Identifiers: Method: get

Path: /subjectapi/observations
Retrieve Procedures for Subject Identifiers: Method: get

Path: /subjectapi/procedures
Retrieve Demographics for Cohort List Name or Subject Identifiers: Method: get

Path: /subjectapi/subjects
Retrieve History for Subject Identifiers: Method: get

Path: /subjectapi/subjects/history
Retrieve Subject Queries Status: Method: get

Path: /subjectapi/subjects/queries
Retrieve Subject Query Status for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}
Retrieve Subject Query Results for a Query Identifier: Method: get

Path: /subjectapi/subjects/queries/{id}/data
Retrieve Demographics for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}
Retrieve Medications for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/administeredmedications
Retrieve Conditions for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/conditions
Retrieve Consent for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/consent
Retrieve Ethnicity for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/ethnicity
Retrieve History for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/history
Retrieve Observations for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/observations
Retrieve Patient for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/patients
Retrieve Procedures for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/procedures
Retrieve Race for a Subject Identifier: Method: get

Path: /subjectapi/subjects/{id}/race
Retrieve Variants for Chromosome: Method: get

Path: /variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get

Path: /variants/byChromosome/byAllele
Retrieve Variants for Variant Effect and Chromosome: Method: get

Path: /variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get

Path: /variants/byEffect/byGenewid
Retrieve Variants for Gene Identifiers and Gene Components: Method: get

Path: /variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get

Path: /variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get

Path: /variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get

Path: /variants/byReferenceId
Retrieve Variant Annotations for a Variant Identifier: Method: get

Path: /variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get

Path: /variants/{id}/cancer
Retrieve Diseases for a Variant Identifier: Method: get

Path: /variants/{id}/diseases
Retrieve Variant Effects for a Variant Identifier: Method: get

Path: /variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get

Path: /variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get

Path: /variants/{id}/variantXRef
Retrieve Clinical Specimen for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/aliases
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/genomicspecimens
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/hasOmicsData
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get

Path: /{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/queries/{id}/data
Retrieve Clinical Specimen for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Genomic Specimens for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get

Path: /{apiContext}/clinicalspecimens/{id}/metadata
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get

Path: /{apiContext}/genomicspecimens
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get

Path: /{apiContext}/genomicspecimens/{id}/metadata
Create Cohort List: Method: post

Path: /cohortlists/create
Create Export Definition: Method: post

Path: /exports
Create Export Job for an Export Definition: Method: post

Path: /exports/{exportId}/jobs
Create Geneset: Method: post

Path: /geneSets/create
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post

Path: /patientapi/clinicalspecimens/queries/count
Invoke Patient Query: Method: post

Path: /patientapi/patients/queries
Retrieve Patients Count: Method: post

Path: /patientapi/patients/queries/count
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post

Path: /subjectapi/clinicalspecimens/queries/count
Invoke Subject Query: Method: post

Path: /subjectapi/subjects/queries
Retrieve Subjects Count: Method: post

Path: /subjectapi/subjects/queries/count
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post

Path: /variants/byReferenceId
Update Configuration Value: Method: put

Path: /config