Clinical Genomic APIs for Oracle Healthcare Foundation

All REST Endpoints

Administration

Administration APIs

Fetch Configuration Value: Method: get
Path: /ohfapi/cg/v3.3/configuration/{configName}
Reload Configuration Cache: Method: delete
Path: /ohfapi/cg/v3.3/config
Retrieve the product version: Method: get
Path: /ohfapi/cg/v3.3/product/version
Update Configuration Value: Method: put
Path: /ohfapi/cg/v3.3/config

Cohort

Delete the list of Cohorts corresponding to the cohort identifiers: Method: delete
Path: /ohfapi/cg/v3.3/cohorts
Fetch Cohort details for an Identifier: Method: get
Path: /ohfapi/cg/v3.3/cohort/{id}
Save Cohort for a Patient/Subject: Method: post
Path: /ohfapi/cg/v3.3/cohort

Cohort Selection/Clinical Specimen

Delete Patient Clinical Specimen API Query by Query Identifier: Method: delete
Path: /ohfapi/cg/v3.3/patientapi/clinicalspecimens/queries/{id}
Delete Subject Clinical Specimen API Query by Query Identifier: Method: delete
Path: /ohfapi/cg/v3.3/subjectapi/clinicalspecimens/queries/{id}
Retrieve Clinical Specimen Query Results for a Query Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/queries/{id}/data
Retrieve Count of Patient Specimens for a Query Name/Criteria: Method: post
Path: /ohfapi/cg/v3.3/patientapi/clinicalspecimens/queries/count
Retrieve Count of Subject Specimens for a Query Name/Criteria: Method: post
Path: /ohfapi/cg/v3.3/subjectapi/clinicalspecimens/queries/count
Retrieve Patient Clinical Specimen Queries Status: Method: get
Path: /ohfapi/cg/v3.3/patientapi/clinicalspecimens/queries
Retrieve Patient Clinical Specimen Query Status: Method: get
Path: /ohfapi/cg/v3.3/patientapi/clinicalspecimens/queries/{id}
Retrieve Patient Clinical Specimen Using Query Criteria: Method: post
Path: /ohfapi/cg/v3.3/patientapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Queries Status: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/clinicalspecimens/queries
Retrieve Subject Clinical Specimen Query Status: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/clinicalspecimens/queries/{id}
Retrieve Subject Clinical Specimen Using Query Criteria: Method: post
Path: /ohfapi/cg/v3.3/subjectapi/clinicalspecimens/queries

Cohort Selection/Patient

Delete Patient API Query: Method: delete
Path: /ohfapi/cg/v3.3/patientapi/patients/queries/{id}
Invoke Patient Query: Method: post
Path: /ohfapi/cg/v3.3/patientapi/patients/queries
Retrieve Patient Queries Status: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/queries
Retrieve Patient Query Results for a Query Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/queries/{id}/data
Retrieve Patient Query Status for a Query Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/queries/{id}
Retrieve Patients Count: Method: post
Path: /ohfapi/cg/v3.3/patientapi/patients/queries/count

Cohort Selection/Subject

Delete Subject API Query: Method: delete
Path: /ohfapi/cg/v3.3/subjectapi/subjects/queries/{id}
Invoke Subject Query: Method: post
Path: /ohfapi/cg/v3.3/subjectapi/subjects/queries
Retrieve Subject Queries Status: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/queries
Retrieve Subject Query Results for a Query Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/queries/{id}/data
Retrieve Subject Query Status for a Query Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/queries/{id}
Retrieve Subjects Count: Method: post
Path: /ohfapi/cg/v3.3/subjectapi/subjects/queries/count

Cohort/Patient

Fetch Patient Count for a Cohort Criteria: Method: post
Path: /ohfapi/cg/v3.3/patientapi/cohort/count

Demographics

Demographics APIs

Find Demographics details: Method: get
Path: /ohfapi/cg/v3.3/demographics/{demographicstype}

Demographics/Patient

Demographics Patient APIs

Retrieve Demographics for a Patient Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/identifier/{id}
Retrieve Demographics for a Patient Record Id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}
Retrieve Demographics for Cohort List Name or Patient Record Ids: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients
Retrieve Patient Group for the Patient Group row id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patientgroup/{id}
Retrieve Patient Groups for a patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/patientgroups
Retrieve Subjects for a Patient Record Id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/subjects

Demographics/Subject

Demographics Subject APIs

Retrieve Demographics for a Subject Record id: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}
Retrieve Demographics for Cohort List Name or Subject Record id: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects
Retrieve Patient for a Subject Record id: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/patients

General

Fetch Cohort Count for the current User: Method: get
Path: /ohfapi/cg/v3.3/cohort/count
Fetch Saved Cohort Details: Method: get
Path: /ohfapi/cg/v3.3/cohort
Get Patient Id demographics information: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/identifier/basicinfo
Retrieve the cloned notebook data for the notebook template name: Method: get
Path: /ohfapi/cg/v3.3/datastudio/notebooks/clone
Retrieve the notebook information for the notebook: Method: get
Path: /ohfapi/cg/v3.3/datastudio/notebook/clone

Genomic Export (VCF)

Create Export Definition: Method: post
Path: /ohfapi/cg/v3.3/exports
Create Export Job for an Export Definition: Method: post
Path: /ohfapi/cg/v3.3/exports/{exportId}/jobs
Delete Export Definition: Method: delete
Path: /ohfapi/cg/v3.3/exports/{id}
Retrieve Export Definition for an Export Identifier: Method: get
Path: /ohfapi/cg/v3.3/exports/{id}
Retrieve Export Definitions for Export Identifiers: Method: get
Path: /ohfapi/cg/v3.3/exports
Retrieve Exported Data for a Job: Method: get
Path: /ohfapi/cg/v3.3/exports/{exportId}/jobs/{jobId}/data
Retrieve Job Information for an Export Identifier and Job Identifier: Method: get
Path: /ohfapi/cg/v3.3/exports/{exportId}/jobs/{jobId}/info
Retrieve Job Status for an Export Identifier and Job Identifier: Method: get
Path: /ohfapi/cg/v3.3/exports/{exportId}/jobs/{jobId}
Retrieve Jobs: Method: get
Path: /ohfapi/cg/v3.3/jobs
Retrieve Jobs for an Export Identifier: Method: get
Path: /ohfapi/cg/v3.3/exports/{exportId}/jobs

Genomic Reference/Assembly

Genomic Reference Assembly APIs

Retrieve Genome Assembly Reference Versions for an Assembly Name: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyRefVersions/byName/{name}
Retrieve Genome Assembly Reference Versions for Assembly Names: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyRefVersions/byName
Retrieve Genomic Assemblies: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblies
Retrieve Genomic Assembly Details for an Assembly Identifier: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyDetails/{id}
Retrieve Genomic Assembly Details for an Assembly Name: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyDetails/byName/{name}
Retrieve Genomic Assembly Details for Assembly Identifiers: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyDetails
Retrieve Genomic Assembly Details for Assembly Names: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyDetails/byName
Retrieve Genomic Assembly Reference Versions for an Assembly Identifier: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyRefVersions/{id}
Retrieve Genomic Assembly Reference Versions for Assembly Identifiers: Method: get
Path: /ohfapi/cg/v3.3/genomeAssemblyRefVersions

Genomic Reference/Gene

Genomic Reference Gene APIs

Retrieve Cancers for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/cancer
Retrieve CDS Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/CDS
Retrieve CDS Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/CDS
Retrieve Diseases for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/diseases
Retrieve Drugs for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/drugs
Retrieve Exon Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/exon
Retrieve Exon Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/exon
Retrieve Gene Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components
Retrieve Gene for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}
Retrieve Gene References for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/geneXref
Retrieve Genes for a Gene Name: Method: get
Path: /ohfapi/cg/v3.3/genes/byGeneName/{name}/{alignmentId}
Retrieve Genes for a Geneset Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/byGeneSet/{id}/{alignmentId}
Retrieve Genes for a HUGO Name: Method: get
Path: /ohfapi/cg/v3.3/genes/byHugoName/{name}/{alignmentId}
Retrieve Genes for a Pathway Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/byPathway/{id}/{alignmentId}
Retrieve Genes for an Assembly Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/byAssembly/{id}
Retrieve Genes for Chromosome: Method: get
Path: /ohfapi/cg/v3.3/genes/byChromosome/{name}/{id}
Retrieve Genes for Gene Names: Method: get
Path: /ohfapi/cg/v3.3/genes/byGeneName
Retrieve Genes for Geneset Identifiers: Method: get
Path: /ohfapi/cg/v3.3/genes/byGeneSet
Retrieve Genes for HUGO Names: Method: get
Path: /ohfapi/cg/v3.3/genes/byHugoName
Retrieve Genes for Pathway Identifiers: Method: get
Path: /ohfapi/cg/v3.3/genes/byPathway
Retrieve Genomic Positions for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/genomicPositions
Retrieve Genomic Positions for Gene Identifiers: Method: get
Path: /ohfapi/cg/v3.3/genes/genomicPositions
Retrieve Intron Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/intron
Retrieve Intron Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/intron
Retrieve misc_feature Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/misc_feature
Retrieve misc_feature Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/misc_feature
Retrieve misc_RNA Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/misc_RNA
Retrieve misc_RNA Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/misc_RNA
Retrieve mRNA Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/mRNA
Retrieve mRNA Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/mRNA
Retrieve Pathways for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/pathways
Retrieve Proteins for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/proteins
Retrieve STS Components for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/components/STS
Retrieve STS Components for a Gene Identifier and Structure Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/{structure}/components/STS
Retrieve Transcripts for a Gene Identifier: Method: get
Path: /ohfapi/cg/v3.3/genes/{id}/transcripts

Genomic Reference/GeneSet

Genomic Reference Geneset APIs

Create Geneset: Method: post
Path: /ohfapi/cg/v3.3/geneSets/create
Delete Geneset by Geneset Identifier: Method: delete
Path: /ohfapi/cg/v3.3/geneSets/delete/{id}
Retrieve Genes for a Geneset Identifier: Method: get
Path: /ohfapi/cg/v3.3/geneSets/{id}
Retrieve Genesets: Method: get
Path: /ohfapi/cg/v3.3/geneSets

Genomic Reference/Pathway

Genomic Reference Pathway APIs

Retrieve HUGO Names for a Pathway Identifier: Method: get
Path: /ohfapi/cg/v3.3/pathways/{id}
Retrieve Pathways: Method: get
Path: /ohfapi/cg/v3.3/pathways

Genomic Reference/Variant

Retrieve Diseases for a Variant Identifier: Method: get
Path: /ohfapi/cg/v3.3/variants/{id}/diseases
Retrieve Variant Annotations for a Variant Identifier: Method: get
Path: /ohfapi/cg/v3.3/variants/{id}
Retrieve Variant Cancers for a Variant Identifier: Method: get
Path: /ohfapi/cg/v3.3/variants/{id}/cancer
Retrieve Variant Effects for a Variant Identifier: Method: get
Path: /ohfapi/cg/v3.3/variants/{id}/variantEffects
Retrieve Variant Predictions for a Variant Identifier: Method: get
Path: /ohfapi/cg/v3.3/variants/{id}/variantPredictions
Retrieve Variant References for a Variant Identifier: Method: get
Path: /ohfapi/cg/v3.3/variants/{id}/variantXRef
Retrieve Variants for Chromosome: Method: get
Path: /ohfapi/cg/v3.3/variants/byChromosome
Retrieve Variants for Chromosome and Allele: Method: get
Path: /ohfapi/cg/v3.3/variants/byChromosome/byAllele
Retrieve Variants for Gene Identifiers and Gene Components: Method: get
Path: /ohfapi/cg/v3.3/variants/byGeneComponents
Retrieve Variants for Prediction and Chromosome: Method: get
Path: /ohfapi/cg/v3.3/variants/byPrediction/byChromosome
Retrieve Variants for Prediction and Gene Identifiers: Method: get
Path: /ohfapi/cg/v3.3/variants/byPrediction/byGenewid
Retrieve Variants for Reference Identifiers and Database with GET Request: Method: get
Path: /ohfapi/cg/v3.3/variants/byReferenceId
Retrieve Variants for Reference Identifiers and Database with POST Request: Method: post
Path: /ohfapi/cg/v3.3/variants/byReferenceId
Retrieve Variants for Variant Effect and Chromosome: Method: get
Path: /ohfapi/cg/v3.3/variants/byEffect/byChromosome
Retrieve Variants for Variant Effect and Gene Identifiers: Method: get
Path: /ohfapi/cg/v3.3/variants/byEffect/byGenewid

Manage Cohort

Create Cohort List: Method: post
Path: /ohfapi/cg/v3.3/cohortlists/create
Delete Cohort List: Method: delete
Path: /ohfapi/cg/v3.3/cohortlists/delete/{id}
Find dimensions in events: Method: get
Path: /ohfapi/cg/v3.3/cohortlists/{id}/events/type/{dimensiontype}
Find patients in events: Method: get
Path: /ohfapi/cg/v3.3/cohortlists/{id}/events/patient
Retrieve Cohort List Members for a Cohort Identifier: Method: get
Path: /ohfapi/cg/v3.3/cohortlists/{id}/members
Retrieve events for a Cohort: Method: get
Path: /ohfapi/cg/v3.3/cohortlists/{id}/events
Retrieve Saved Queries: Method: get
Path: /ohfapi/cg/v3.3/savedqueries

Phenotype

Phenotype APIs

Find Clinical Event Types: Method: get
Path: /ohfapi/cg/v3.3/dimension/{dimensiontype}/{clinicalType}
Find Clinical Event Types - Code System attributes: Method: get
Path: /ohfapi/cg/v3.3/dimension/{dimensiontype}/{clinicalType}/CodeSystem
Find dimensions: Method: get
Path: /ohfapi/cg/v3.3/dimension/{dimensiontype}

Phenotype/Administered Medications

Phenotype Medication APIs

Retrieve Medication for a Medication Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/administeredmedications/{id}
Retrieve Medications for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/administeredmedications
Retrieve Medications for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/administeredmedications
Retrieve Medications for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/administeredmedications
Retrieve Medications for Subject Identifiers: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/administeredmedications

Phenotype/Conditions (Diagnosis)

Phenotype Condition APIs

Retrieve Clinical Specimens for a Condition Patient Record id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/conditions/{id}/clinicalspecimens
Retrieve Condition for a Condition Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/conditions/{id}
Retrieve Conditions for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/conditions
Retrieve Conditions for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/conditions
Retrieve Conditions for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/conditions
Retrieve Conditions for Subject Identifiers: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/conditions
Retrieve Medications for a Condition Patient Record id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/conditions/{id}/administeredmedications
Retrieve Observations for a Condition Patient Record id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/conditions/{id}/observations
Retrieve Procedures for a Condition Patient Record id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/conditions/{id}/procedures

Phenotype/Consent

Phenotype Consent APIs

Retrieve Consent for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/consent
Retrieve Consent for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/consent
Retrieve Consent for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/consents
Retrieve Consent for Subject Identifiers: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/consents

Phenotype/Encounter

Phenotype Encounter APIs

Retrieve Clinical Encounters for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/encounters
Retrieve Clinical Encounters for a Subject: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/encounters
Retrieve Clinical Encounters for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/encounters
Retrieve Clinical Encounters for Subjects: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/encounters

Phenotype/Ethnicity

Phenotype Ethnicity APIs

Retrieve Ethnicity for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/ethnicity
Retrieve Ethnicity for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/ethnicity

Phenotype/History

Phenotype History APIs

Retrieve History for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/history
Retrieve History for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/history
Retrieve History for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/history
Retrieve History for Subject Identifiers: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/history

Phenotype/Observation

Phenotype Observation APIs

Retrieve Observation for an Observation Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/observations/{id}
Retrieve Observations for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/observations
Retrieve Observations for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/observations
Retrieve Observations for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/observations
Retrieve Observations for Subject Identifiers: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/observations

Phenotype/Procedure

Phenotype Procedure APIs

Retrieve Procedure for a Procedure Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/procedures/{id}
Retrieve Procedures for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/procedures
Retrieve Procedures for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/procedures
Retrieve Procedures for Patients: Method: get
Path: /ohfapi/cg/v3.3/patientapi/procedures
Retrieve Procedures for Subject Identifiers: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/procedures

Phenotype/Procedures

Retrieve Procedures Types for a Procedure Patient Record id: Method: get
Path: /ohfapi/cg/v3.3/patientapi/procedures/{id}/proceduretypes

Phenotype/Race

Phenotype Race APIs

Retrieve Race for a Patient: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/race
Retrieve Race for a Subject Identifier: Method: get
Path: /ohfapi/cg/v3.3/subjectapi/subjects/{id}/race

Specimen/Clinical

Retrieve Clinical Specimen Alias for a Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/{id}/aliases
Retrieve Clinical Specimen Alias for Specimen Identifiers: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/aliases
Retrieve Clinical Specimen for a Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/{id}
Retrieve Clinical Specimen for Specimen Identifiers: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens
Retrieve Clinical Specimen Metadata for a Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/{id}/metadata
Retrieve Clinical Specimen Metadata for Specimen Identifiers: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/metadata
Retrieve Clinical Specimens for a Patient Identifier: Method: get
Path: /ohfapi/cg/v3.3/patientapi/patients/{id}/clinicalspecimens
Retrieve Clinical Specimens having Omics Data for Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/{id}/hasOmicsData
Retrieve Clinical Specimens having Omics Data for Specimen Identifiers: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/hasOmicsData
Retrieve Diagnosis for a Clinical Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/{id}/conditions

Specimen/Genomics

Retrieve Genomic Files for a Specimen Number and Specimen Vendor Number: Method: get
Path: /ohfapi/cg/v3.3/genomicspecimens/genomicFiles
Retrieve Genomic Specimen details for a Clinical Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/genomicspecimens/{id}
Retrieve Genomic Specimen details for Clinical Specimen Identifiers: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/genomicspecimens
Retrieve Genomic Specimen File Metadata for Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/genomicspecimens/{id}/fileMetadata
Retrieve Genomic Specimen Metadata for Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/genomicspecimens/{id}/metadata
Retrieve Genomic Specimens for a Specimen Identifier: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/{id}/genomicspecimens
Retrieve Genomics Specimen Identifiers for Clinical Specimen Identifiers: Method: get
Path: /ohfapi/cg/v3.3/{apiContext}/clinicalspecimens/genomicspecimens

Studies

Retrieve Studies for a Study Identifier: Method: get
Path: /ohfapi/cg/v3.3/studies/{id}
Retrieve Studies for Study Identifiers: Method: get
Path: /ohfapi/cg/v3.3/studies
Retrieve Studies for Study Identifiers and Names: Method: get
Path: /ohfapi/cg/v3.3/studies/search
Retrieve Study Specimens for a Study Identifier: Method: get
Path: /ohfapi/cg/v3.3/studies/{id}/specimens
Retrieve Study Subjects for a Study Identifier: Method: get
Path: /ohfapi/cg/v3.3/studies/{id}/subjects