Table of Contents
- Title and Copyright Information
- Preface
- 1 Getting Started
- 2 Reports and Batch Jobs
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Part I Setting Up and Administering TMS
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3
Administration
- Security
- Defining Users
- Using Data Access Groups (DAGs) for Security
- Customizing Defaults in TMS Windows Using TMS Settings
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Setting TMS Preferences with Reference Codelist Values
- Reference Codelists in Integrated and Nonintegrated Environments
- Editing Reference Codelists
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TMS_CONFIGURATION
- CREATEGLOBALVTA
- GLOVTAAPPRREQD
- DOMVTAAPPRREQD
- NONAPPRVTAUSED
- ALLOWGLOVTAS
- MAINTAINEXT
- SUPPRESNAMDRELS
- WRKFLWINFALLVSN
- VTAAPPRFLAG
- DTAPPRFLAG
- CLCLEARCOMMENT
- CLCLEARACTION
- AUTOGLOVTAS
- SYNCREFRESHMV
- EMBEDDEDTMS
- OCDISCINTCOMM
- MTRECCLASSHOUR
- DOMACTAPPRREQD
- DEALLOCONLY
- NONAPPRDICTCODE
- NEGATIVELIST
- Changing TMS_CONFIGURATION Settings After Data Has Been Processed
- Other Installation-wide Codelists
- Local Codelists
- Autoclassification
- Synchronization
- Writing a Procedure to Change the Dictionary Display
- Controlling the Use of Materialized Views
- Enabling Context Searches for Non-English Dictionaries
- Refreshing the Context Server Index
- Analyzing Tables
- Running Scripts to Gather Schema Statistics for the 12c Optimizer
- Adding and Configuring WebLogic Server Data Sources
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TMS Lite Browser Administration
- Granting User Privileges for Using the TMS Lite Browser
- Creating a Launch Page, Button, or Link for the TMS Lite Browser
- Customizing the TMS Lite Browser URL to Support Additional Databases or Automatic Login
- Enabling and Disabling Automatic Login
- Enabling TMS Lite Browser Logs
- Using the About Window
- Troubleshooting
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4
Integrating TMS with Oracle Clinical
- Managing the TMS/Oracle Clinical Workflow
- Batch Validation in an Integrated OC/TMS Environment
- Setting Up Data Collection in Oracle Clinical
- Linking an Oracle Clinical Study to TMS
- Accessing Oracle Clinical Data in TMS
- Setting Integration Reference Codelist Values
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5
Integrating TMS with Other Systems
- Using TMS with Other Oracle Health Sciences Applications
- Integrating TMS with Non-Oracle Systems
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Using TMS with Disconnected Systems
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Setting Up Disconnected System Integration
- Setting Up the Sponsor Instance
- Setting Up the Source Instance
- Creating Directories on the Database Server
- Defining the External Source Data System
- Running the DSI Initialization Job
- Register Remote Databases
- Defining Disconnected System Integrations
- Defining X Areas
- Defining XML Tag Mappings
- Setting DSI Preferences with Reference Codelist Settings
- Synchronizing Dictionary Contents Between Sites
- Granting User Privileges
- Using DSI from the Source Site
- Using DSI from the Sponsor Site
- Viewing XML File and Record Statuses
- Viewing Error Files
- DSI Batch Jobs
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Setting Up Disconnected System Integration
- Defining External System Information in TMS
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6
Defining and Loading Dictionaries
- Dictionary Types
- Planning Strong Dictionary Structure
- Defining a Dictionary
- Defining Dictionary-wide Informative Notes Before Activation
- Loading a Dictionary
- Activating Loaded Terms
- Evaluating Dictionary Contents
- Defining Links Between Dictionaries
- Creating Domains and Assigning Dictionaries to Domains
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7
Defining Other TMS Elements
- Defining HTML Layouts
- Customizing Report Templates
- Defining and Using Actions
- Defining Search Objects
- Defining Named Relations
- Defining Informative Note Attributes
- Defining Dictionary-wide Informative Notes
- 8 Upgrading to a New Dictionary Version
- 9 Allocating Tasks to TMS Users
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3
Administration
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Part II Managing Classifications
- 10 Omission Management
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11
VTA and VTI Maintenance
- Promoting and Demoting VTAs
- Maintaining Action Assignments
- Reclassifying and Declassifying Verbatim Terms
- Reclassifying Indication Assignments
- Performing High-Level Reclassification
- Copying Domains
- VTA and VTI Maintenance Reports
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12
Repository Maintenance
- About Repository Data
- About the Maintain Repository Data Window
- Modifying Repository Data in the Maintain Repository Data Window
- Using the Repository Authoring Window
- Creating Informative Notes for Terms and Relations
- Using the Maintenance Wizard
- Viewing and Deleting Dictionary Loading Error Logs
- Using the Release Label Authoring Window
- Activating Data
- Repository Maintenance Reports
- Translation Reports to Identify Inconsistent Data
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Part III Browsing the Data Repository
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13
Browsing the Repository in TMS
- Browsing Informative Notes
- Viewing Data in the Browse Repository Data Window
- Viewing Data in the Browse VT Classification Data Window
- Browsing Verbatim Term History
- Repository Reports
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14
Using the TMS Lite Browser
- Overview
- TMS Lite Browser Map
- Choosing a Type of Search
- Searching for Terminology Data
- Searching for Terms Using Filter Dictionaries
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Searching for Verbatim Term Assignments (VTAs and VTIs)
- Perform a Simple Verbatim Term Search
- Perform an Advanced Verbatim Term Search
- Analyze the Results of a Verbatim Term Search
- Select a Verbatim Term Record
- Viewing Source Data for a Verbatim Term Record
- Viewing a Source Data Record with Markup
- Viewing Data from an External Drill-down Function or View
- Viewing VTA and Omission Status Information
- Viewing External System Information for Omissions
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Browsing a Dictionary Hierarchy
- Introduction to Browsing the Dictionary Hierarchy
- Starting a Browsing Session from the Hierarchies Link
- Browsing in the Terminology Data Tree Structure
- Expanding a Branch One Level Using the Arrow Keys
- Expanding a Branch in the Dictionary
- Reversing the Orientation of the Tree Window
- Launching the Term Details Window
- Searching for Source Data
- Examining a Term's Details and History
- Examining a Relation's Details and History
- Examining a Record's Informative Notes
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13
Browsing the Repository in TMS
- A Sample Dictionary Definitions
- B Disconnected System Integration XML Files
- C GUI Quick Reference
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Glossary